ggKbase home page

L3_106_079G1_scaffold_65

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_079G1_scaffold_65_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1..501
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V883_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49825.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_106_079G1_scaffold_65_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

786..1319
DNA (534bp) protein (178aa)
Transcriptional regulator, MarR family n=2 Tax=Bifidobacterium bifidum RepID=E3ELZ5_BIFBS
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:ADO52691.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_106_079G1_scaffold_65_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1316..3199
DNA (1884bp) protein (628aa)
ATP-binding cassette, subfamily B n=2 Tax=Bifidobacterium bifidum RepID=E3ELZ6_BIFBS
ATP-binding cassette, subfamily B {ECO:0000313|EMBL:ADO52692.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
ATP-binding cassette, subfamily B
L3_106_079G1_scaffold_65_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3196..5211
DNA (2016bp) protein (672aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGM1_BIFBI
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:AFL04034.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
mdlB; ABC transporter ATP-binding protein
L3_106_079G1_scaffold_65_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5448..6434)
DNA (987bp) protein (329aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELZ8_BIFBS
patatin-like phospholipase domain
Uncharacterized protein {ECO:0000313|EMBL:ADO52694.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_106_079G1_scaffold_65_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6513..7322)
DNA (810bp) protein (270aa)
murI; glutamate racemase (EC:5.1.1.3)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Glutamate racemase n=6 Tax=Bifidobacterium bifidum RepID=E3ELZ9_BIFBS
L3_106_079G1_scaffold_65_7
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7550..8449
DNA (900bp) protein (300aa)
Diaminopimelate epimerase {ECO:0000256|SAAS:SAAS00028055}; EC=5.1.1.7 {ECO:0000256|SAAS:SAAS00028063};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Diaminopimelate epimerase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GMX0_9BIFI
dapF; diaminopimelate epimerase
L3_106_079G1_scaffold_65_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8550..9209)
DNA (660bp) protein (220aa)
Vitamin K epoxide reductase n=3 Tax=Bifidobacterium bifidum RepID=I3WGM6_BIFBI
vitamin K epoxide reductase
Vitamin K epoxide reductase {ECO:0000313|EMBL:EKF15603.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_106_079G1_scaffold_65_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9345..10226
DNA (882bp) protein (294aa)
PHP domain protein n=3 Tax=Bifidobacterium bifidum RepID=U2DQR9_BIFBI
putative metal-dependent phosphoesterase
PHP domain containing protein {ECO:0000313|EMBL:KFI42545.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_106_079G1_scaffold_65_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10385..10609)
DNA (225bp) protein (75aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=K2M115_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB22996.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_106_079G1_scaffold_65_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10766..12244)
DNA (1479bp) protein (493aa)
Aminoglycoside phospho transferase n=2 Tax=Bifidobacterium bifidum RepID=I3WGM9_BIFBI
aminoglycoside phospho transferase
Aminoglycoside phospho transferase {ECO:0000313|EMBL:AFL04042.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_106_079G1_scaffold_65_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12283..13887
DNA (1605bp) protein (535aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
DNA helicaseII-like protein n=2 Tax=Bifidobacterium bifidum RepID=E4P084_BIFBP
uvrD; putative DNA helicase II-like protein
L3_106_079G1_scaffold_65_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13959..15503)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGN1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04044.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_106_079G1_scaffold_65_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15565..16413
DNA (849bp) protein (283aa)
peptidase S16, lon domain-containing protein (EC:3.4.21.53)
Peptidase S16, lon domain protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P086_BIFBP
Lon protease (S16) C-terminal proteolytic domain {ECO:0000313|EMBL:EKF16488.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_106_079G1_scaffold_65_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16609..17034
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2C0H1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83964.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_106_079G1_scaffold_65_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17218..18261)
DNA (1044bp) protein (348aa)
Glucose-resistance amylase regulator n=2 Tax=Bifidobacterium bifidum RepID=K2H8Q2_BIFBI
Glucose-resistance amylase regulator {ECO:0000313|EMBL:EKE50376.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ccpA; glucose-resistance amylase regulator
L3_106_079G1_scaffold_65_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18406..18780)
DNA (375bp) protein (125aa)
Uncharacterized protein n=5 Tax=Bifidobacterium bifidum RepID=E4V8A0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE50377.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_106_079G1_scaffold_65_18
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18884..19780)
DNA (897bp) protein (299aa)
thiD; phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=3 Tax=Bifidobacterium RepID=I3WGN6_BIFBI
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CDB22988.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_106_079G1_scaffold_65_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19888..21096
DNA (1209bp) protein (403aa)
ATPase family associated with various cellular activities (AAA) n=6 Tax=Bifidobacterium RepID=E3EM12_BIFBS
ATPase family associated with various cellular activities (AAA)
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EKF16483.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_106_079G1_scaffold_65_20
unknown

Not on your lists

21212..21745
DNA (534bp) protein (178aa)

This feature has no annotations

L3_106_079G1_scaffold_65_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21686..22159)
DNA (474bp) protein (158aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WGN8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI42556.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_106_079G1_scaffold_65_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22282..25038)
DNA (2757bp) protein (919aa)
thiC; thiamine biosynthesis protein (EC:2.5.1.3)
Phosphomethylpyrimidine synthase {ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|SAAS:SAAS00007809};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Thiamine biosynthesis protein n=4 Tax=Bifidobacterium bifidum RepID=I3WGN9_BIFBI
L3_106_079G1_scaffold_65_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25181..26026)
DNA (846bp) protein (282aa)
thiM; hydroxyethylthiazole kinase (EC:2.7.1.50)
Hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030}; EC=2.7.1.50 {ECO:0000256|HAMAP-Rule:MF_00228, ECO:0000256|SAAS:SAAS00137030};; 4-methyl-5-beta-hydroxyethylthiazole kinase {ECO:0000256|HAMAP-Rule:MF_00228}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Hydroxyethylthiazole kinase n=7 Tax=Bifidobacterium RepID=E3EMP4_BIFBS
L3_106_079G1_scaffold_65_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26420..32227
DNA (5808bp) protein (1936aa)
Beta-galactosidase BbgIII n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EMP5_BIFBS
Beta-galactosidase BbgIII {ECO:0000313|EMBL:ADO52712.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
beta-galactosidase BbgIII
L3_106_079G1_scaffold_65_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


32403..33923
DNA (1521bp) protein (507aa)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Glycine--tRNA ligase n=5 Tax=Bifidobacterium bifidum RepID=I3WGP2_BIFBI
L3_106_079G1_scaffold_65_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34014..35294
DNA (1281bp) protein (427aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2MSF0_BIFBI
hypothetical protein
Putative TIM-barrel protein {ECO:0000313|EMBL:ADO52714.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_106_079G1_scaffold_65_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35443..36723
DNA (1281bp) protein (427aa)
Cell division protein FtsZ n=8 Tax=Bifidobacterium bifidum RepID=E3EMP8_BIFBS
ftsZ; cell division protein
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_106_079G1_scaffold_65_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36745..37215
DNA (471bp) protein (157aa)
Cell division protein SepF n=8 Tax=Bifidobacterium RepID=E3EMP9_BIFBS
hypothetical protein
Cell division protein SepF {ECO:0000256|HAMAP-Rule:MF_01197}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_106_079G1_scaffold_65_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37343..37624
DNA (282bp) protein (94aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=E4V8B3_BIFBI
tlyC; putative hemolysin
Conserved hypothetical membrane spanning protein with YGGT family {ECO:0000313|EMBL:CDB22978.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_106_079G1_scaffold_65_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37734..39035
DNA (1302bp) protein (434aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WGP7_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFL04060.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Displaying items 1-30 of 56 in total

View Taxonomy