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L3_106_079G1_scaffold_180

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_079G1_scaffold_180_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(103..3858)
DNA (3756bp) protein (1252aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000313|EMBL:EDN79153.1}; EC=6.3.5.3 {ECO:0000313|EMBL:EDN79153.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYI9_RUMGN
L3_106_079G1_scaffold_180_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3956..4675)
DNA (720bp) protein (240aa)
TIGR01906 family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TS77_9FIRM
TIGR01906 family protein {ECO:0000313|EMBL:CCZ68580.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
integral membrane protein
L3_106_079G1_scaffold_180_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4815..5690
DNA (876bp) protein (292aa)
LysR substrate binding domain protein n=4 Tax=Clostridiales RepID=A7AYJ1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49860.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Transcriptional regulator
L3_106_079G1_scaffold_180_4
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5698..8049)
DNA (2352bp) protein (784aa)
DEAD2 domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYJ2_RUMGN
DEAD2 domain protein {ECO:0000313|EMBL:EDN79156.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Rad3-related DNA helicases
L3_106_079G1_scaffold_180_5
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8055..8990)
DNA (936bp) protein (312aa)
SPFH/Band 7/PHB domain protein n=2 Tax=Clostridiales RepID=A7AYJ3_RUMGN
SPFH/Band 7/PHB domain protein {ECO:0000313|EMBL:CCZ68577.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Membrane protease subunits, stomatin/prohibitin homologs
L3_106_079G1_scaffold_180_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8994..9434)
DNA (441bp) protein (147aa)
Nodulation efficiency protein D n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYJ4_RUMGN
Nodulation efficiency protein D {ECO:0000313|EMBL:EDN79158.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_106_079G1_scaffold_180_7
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9514..10275)
DNA (762bp) protein (254aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5TS74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49864.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_106_079G1_scaffold_180_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10288..11616)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BZP8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49865.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted DNA-binding protein with the Helix-hairpin-helix motif
L3_106_079G1_scaffold_180_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11755..13377)
DNA (1623bp) protein (541aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYJ7_RUMGN
L3_106_079G1_scaffold_180_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13404..13661)
DNA (258bp) protein (86aa)
Phosphocarrier, HPr family n=4 Tax=Clostridiales RepID=A7AYJ8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20596.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Phosphotransferase System HPr (HPr) Family
L3_106_079G1_scaffold_180_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13788..14717)
DNA (930bp) protein (310aa)
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Cysteine synthase A n=3 Tax=Clostridiales RepID=F7JSG4_9FIRM
cysteine synthase A
L3_106_079G1_scaffold_180_12
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14750..15190)
DNA (441bp) protein (147aa)
Transcriptional regulator, Rrf2 family n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYK0_RUMGN
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:EDN79164.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
rrf2 family protein, putative transcriptional regulator
L3_106_079G1_scaffold_180_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15389..15817)
DNA (429bp) protein (143aa)
Transcriptional regulator, Rrf2 family n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYK1_RUMGN
Transcriptional regulator, Rrf2 family {ECO:0000313|EMBL:EDN79165.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
BadM/Rrf2 family transcriptional regulator
L3_106_079G1_scaffold_180_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16093..16290
DNA (198bp) protein (66aa)
Cold-shock DNA-binding domain protein n=6 Tax=Clostridiales RepID=A7AYK4_RUMGN
Cold-shock DNA-binding domain protein {ECO:0000313|EMBL:EDN79168.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
cold-shock DNA-binding protein family
L3_106_079G1_scaffold_180_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16416..17651)
DNA (1236bp) protein (412aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYK5_RUMGN
L3_106_079G1_scaffold_180_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17741..22252)
DNA (4512bp) protein (1504aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
DNA polymerase III polC-type n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7AYK6_RUMGN
DNA polymerase III subunit alpha
L3_106_079G1_scaffold_180_17
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22240..23301)
DNA (1062bp) protein (354aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TS66_9FIRM
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
L3_106_079G1_scaffold_180_18
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23394..23846)
DNA (453bp) protein (151aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7AYK8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49875.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_106_079G1_scaffold_180_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24033..24380
DNA (348bp) protein (116aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=R5TS32_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49876.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Predicted transcriptional regulator
L3_106_079G1_scaffold_180_20
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24412..25260)
DNA (849bp) protein (283aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UIF3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68562.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted membrane protein
L3_106_079G1_scaffold_180_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25254..26336)
DNA (1083bp) protein (361aa)
Histidinol-phosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01023}; EC=2.6.1.9 {ECO:0000256|HAMAP-Rule:MF_01023};; Imidazole acetol-phosphate transaminase {ECO:0000256|HAMAP-Rule:MF_01023}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
histidinol-phosphate aminotransferase (EC:2.6.1.9)
Histidinol-phosphate aminotransferase n=3 Tax=Clostridiales RepID=F7JSH2_9FIRM
L3_106_079G1_scaffold_180_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26314..27531)
DNA (1218bp) protein (406aa)
Aspartate/tyrosine/aromatic aminotransferase (EC:2.6.1.1)
Aminotransferase, class I/II n=3 Tax=Lachnospiraceae RepID=A7AYL3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD20608.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_106_079G1_scaffold_180_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27559..28461)
DNA (903bp) protein (301aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7AYL4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ68542.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
Displaying 23 items

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