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L3_106_079G1_scaffold_346

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_106_079G1_scaffold_346_1
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..364
DNA (363bp) protein (121aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Clostridium sporosphaeroides RepID=UPI000370EE3E
L3_106_079G1_scaffold_346_2
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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403..744
DNA (342bp) protein (114aa)
50S ribosomal protein L17 n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YCC7_9FIRM
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
LSU ribosomal protein L17P
L3_106_079G1_scaffold_346_3
Faecalitalea cylindroides, Faecalitalea, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1043..4417
DNA (3375bp) protein (1125aa)
Bacterial group 3 Ig-like protein n=1 Tax=[Eubacterium] cylindroides ATCC 27803 RepID=U2P722_9FIRM
Bacterial group 3 Ig-like protein {ECO:0000313|EMBL:ERK46315.1}; TaxID=649755 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Faecalitalea.;" source="Faecalitalea cylindroides ATCC 27803.;"
L3_106_079G1_scaffold_346_4
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4512..5675)
DNA (1164bp) protein (388aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
4-phosphoerythronate dehydrogenase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6C4_9CLOT
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:CCX37269.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_106_079G1_scaffold_346_5
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5697..6818)
DNA (1122bp) protein (374aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000256|RuleBase:RU004505};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Clostridium leptum CAG:27 RepID=R6NBD6_9CLOT
L3_106_079G1_scaffold_346_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7100..7453
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZHL3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75641.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
DRTGG domain.
L3_106_079G1_scaffold_346_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7450..7878
DNA (429bp) protein (143aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Clostridium RepID=A7VZ55_9CLOT
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:CDC05601.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_106_079G1_scaffold_346_8
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7889..9196
DNA (1308bp) protein (436aa)
4Fe-4S binding domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6P6R2_9CLOT
4Fe-4S binding domain protein {ECO:0000313|EMBL:CDC05602.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_106_079G1_scaffold_346_9
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9288..9620
DNA (333bp) protein (111aa)
DRTGG domain protein n=2 Tax=Clostridium RepID=A7VZ58_9CLOT
DRTGG domain protein {ECO:0000313|EMBL:CDC05603.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
HPr kinase
L3_106_079G1_scaffold_346_10
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9617..10351
DNA (735bp) protein (245aa)
PHP domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6NBE0_9CLOT
PHP domain protein {ECO:0000313|EMBL:CDC05604.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_106_079G1_scaffold_346_11
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10586..11080
DNA (495bp) protein (165aa)
NADH-quinone oxidoreductase, E subunit n=2 Tax=Clostridium RepID=A7VZ60_9CLOT
NADH-quinone oxidoreductase, E subunit {ECO:0000313|EMBL:EDO59838.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
NADH dehydrogenase (ubiquinone) 24 kDa subunit
L3_106_079G1_scaffold_346_12
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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11086..11625
DNA (540bp) protein (180aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YMW4_9FIRM
hypothetical protein
L3_106_079G1_scaffold_346_13
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11622..11792
DNA (171bp) protein (57aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VZ62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC05608.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
ferredoxin
Displaying 13 items

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