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L3_108_000G1_scaffold_212

Search features with annotation key words

Displaying items 1-30 of 109 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_212_1
Treponema primitia, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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2..280
DNA (279bp) protein (93aa)
glyceraldehyde-3-phosphate dehydrogenase, type II (EC:1.2.1.59)
Glyceraldehyde-3-phosphate dehydrogenase, type II {ECO:0000313|EMBL:AEF83705.1}; EC=1.2.1.59 {ECO:0000313|EMBL:AEF83705.1};; TaxID=545694 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2).;"
glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Treponema primitia RepID=UPI0002554F06
L3_108_000G1_scaffold_212_2
Spirochaeta smaragdinae, Spirochaeta, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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271..1530
DNA (1260bp) protein (420aa)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532}; EC=2.7.2.3 {ECO:0000256|HAMAP-Rule:MF_00145, ECO:0000256|RuleBase:RU000532};; TaxID=573413 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Spirochaeta.;" source="Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228).;"
Phosphoglycerate kinase n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RCP3_SPISS
L3_108_000G1_scaffold_212_3
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1639..2196
DNA (558bp) protein (186aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI000361DA93
Ribosomal-protein-S5-alanine N-acetyltransferase {ECO:0000313|EMBL:KJJ66333.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
acetyltransferase
L3_108_000G1_scaffold_212_4
Clostridium sp. HMP27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2219..3472
DNA (1254bp) protein (418aa)
Putative uncharacterized protein n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3AFZ6_CARHZ
Transcriptional regulator {ECO:0000313|EMBL:KGK89912.1}; TaxID=1487921 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HMP27.;"
hypothetical protein
L3_108_000G1_scaffold_212_5
Halobacillus halophilus, Halobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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3783..4643
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Flexithrix dorotheae RepID=UPI00037B0628
yvrE; regucalcin family protein
Regucalcin family protein {ECO:0000313|EMBL:CCG44133.1}; TaxID=866895 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Halobacillus.;" source="Halobacillus halophilus (strain ATCC 35676 / DSM 2266 / JCM 20832 /; NBRC 102448/ NCIMB 2269) (Sporosarcina halophila).;"
L3_108_000G1_scaffold_212_6
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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4647..5405
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5ILW2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI57381.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
short-chain dehydrogenase/reductase SDR
L3_108_000G1_scaffold_212_7
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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5414..7075
DNA (1662bp) protein (554aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EP60_9FIRM
L3_108_000G1_scaffold_212_8
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7086..7778
DNA (693bp) protein (231aa)
Dimethylmenaquinone methyltransferase n=3 Tax=Clostridium RepID=N9YNE3_9CLOT
Dimethylmenaquinone methyltransferase {ECO:0000313|EMBL:ENZ48832.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
rraA2; dimethylmenaquinone methyltransferase
L3_108_000G1_scaffold_212_9
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7801..9711
DNA (1911bp) protein (637aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5L2F0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY67227.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
hypothetical protein
L3_108_000G1_scaffold_212_10
Faecalibacterium sp. CAG:1138, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10138..11580
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Faecalibacterium sp. CAG:1138 RepID=R5FU22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY03671.1}; TaxID=1262896 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:1138.;"
sugar transporter
L3_108_000G1_scaffold_212_11
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11631..13793
DNA (2163bp) protein (721aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NTI8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC11714.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
glycoside hydrolase family protein
L3_108_000G1_scaffold_212_12
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14063..15319
DNA (1257bp) protein (419aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6ITC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41252.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
L3_108_000G1_scaffold_212_13
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15465..16808
DNA (1344bp) protein (448aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Clostridium leptum CAG:27 RepID=R6MWF6_9CLOT
L3_108_000G1_scaffold_212_14
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16863..17279
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:180 RepID=R5N702_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY92952.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
hypothetical protein
L3_108_000G1_scaffold_212_15
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17710..18204
DNA (495bp) protein (165aa)
Putative ACR COG1399 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IXG8_9FIRM
Putative ACR COG1399 {ECO:0000313|EMBL:CDB42697.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
Predicted metal-binding, possibly nucleic acid-binding protein
L3_108_000G1_scaffold_212_16
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18246..18428
DNA (183bp) protein (61aa)
50S ribosomal protein L32 n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IB95_9FIRM
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
hypothetical protein
L3_108_000G1_scaffold_212_17
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18558..19877
DNA (1320bp) protein (440aa)
Putative FeS-containing Cyanobacterial-specific oxidoreductase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VPH6_9CLOT
Putative FeS-containing Cyanobacterial-specific oxidoreductase {ECO:0000313|EMBL:EDO62863.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_108_000G1_scaffold_212_18
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19914..21239
DNA (1326bp) protein (442aa)
GTPase Der n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6E4L4_9FIRM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
engA; GTP-binding protein EngA
L3_108_000G1_scaffold_212_19
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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comp(21359..22081)
DNA (723bp) protein (241aa)
Response regulator receiver domain protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RAV1_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDC42439.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_108_000G1_scaffold_212_20
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22074..24770)
DNA (2697bp) protein (899aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
kdpD; OmpR family two component system sensor histidine kinase (EC:2.7.13.3)
Putative histidine kinase KdpD n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2F3E2_CLOS4
L3_108_000G1_scaffold_212_21
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25165..26046)
DNA (882bp) protein (294aa)
UPI0003071751 related cluster n=1 Tax=unknown RepID=UPI0003071751
Uncharacterized protein {ECO:0000313|EMBL:EES50326.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_108_000G1_scaffold_212_22
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26136..26741)
DNA (606bp) protein (202aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
kdpC; high affinity K+-transporting ATPase subunit C (EC:3.6.3.12)
Potassium-transporting ATPase C chain n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LC07_9FIRM
L3_108_000G1_scaffold_212_23
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26784..28853)
DNA (2070bp) protein (690aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=428128 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum DSM 15702.;"
kdpB; high affinity K+-transporting ATPase subunit B (EC:3.6.3.12)
Potassium-transporting ATPase B chain n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MRV8_9FIRM
L3_108_000G1_scaffold_212_24
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28866..30677)
DNA (1812bp) protein (604aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
kdpA; high affinity K+-transporting ATPase subunit A (EC:3.6.3.12)
Potassium-transporting ATPase A chain n=1 Tax=Clostridium sp. CAG:352 RepID=R6QPM4_9CLOT
L3_108_000G1_scaffold_212_25
unknown

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comp(30674..30766)
DNA (93bp) protein (31aa)

This feature has no annotations

L3_108_000G1_scaffold_212_26
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30873..31067)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6R009_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC38539.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
L3_108_000G1_scaffold_212_27
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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31487..32596
DNA (1110bp) protein (370aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
potA; spermidine/putrescine ABC transporter ATP-binding protein (EC:3.6.3.31)
TOBE domain protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PRD1_9CLOT
L3_108_000G1_scaffold_212_28
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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32600..33427
DNA (828bp) protein (276aa)
Uncharacterized protein n=2 Tax=root RepID=R5MEJ6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY89963.1}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
ABC-type spermidine/putrescine transport system, permease component I
L3_108_000G1_scaffold_212_29
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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33508..34335
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NVC9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC12359.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
binding-protein-dependent transport system inner membrane protein
L3_108_000G1_scaffold_212_30
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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34332..35561
DNA (1230bp) protein (410aa)
Extracellular solute-binding protein family 1 n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5XXM9_9FIRM
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:CDA19913.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
spermidine/putrescine transport ATP-binding protein PotD
Displaying items 1-30 of 109 in total

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