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L3_108_000G1_scaffold_223

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_223_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..572
DNA (570bp) protein (190aa)
Helix-turn-helix domain protein n=1 Tax=Clostridium difficile P28 RepID=T4NF57_CLODI
Helix-turn-helix domain protein {ECO:0000313|EMBL:EQJ54341.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_108_000G1_scaffold_223_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

702..1553
DNA (852bp) protein (284aa)
ATPase associated with various cellular activities family protein n=1 Tax=Clostridium difficile P28 RepID=T4NGF4_CLODI
ATPase associated with various cellular activities family protein {ECO:0000313|EMBL:EQJ54342.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_108_000G1_scaffold_223_3
unknown

Not on your lists

comp(1466..1810)
DNA (345bp) protein (115aa)

This feature has no annotations

L3_108_000G1_scaffold_223_4
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2125..4071)
DNA (1947bp) protein (649aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=S2Z5A8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG90429.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
NADH:flavin oxidoreductases, Old Yellow Enzyme family
L3_108_000G1_scaffold_223_5
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4319..5380)
DNA (1062bp) protein (354aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AIN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG90430.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
glycosyl hydrolases 39 family protein
L3_108_000G1_scaffold_223_6
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5416..7275)
DNA (1860bp) protein (620aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75432.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
hypothetical protein
L3_108_000G1_scaffold_223_7
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7500..8645)
DNA (1146bp) protein (382aa)
lactaldehyde reductase (EC:1.1.1.77)
Lactaldehyde reductase n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTT0_9FIRM
Lactaldehyde reductase {ECO:0000313|EMBL:EGC75431.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
L3_108_000G1_scaffold_223_8
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8774..9385)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTS9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75430.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
transcriptional regulator
L3_108_000G1_scaffold_223_9
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9564..10259)
DNA (696bp) protein (232aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2Z5B7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD65162.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
hypothetical protein
L3_108_000G1_scaffold_223_10
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10256..11752)
DNA (1497bp) protein (499aa)
Sugar (pentulose and hexulose) kinases (EC:2.7.1.5 2.7.1.51)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YKZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD65163.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
L3_108_000G1_scaffold_223_11
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11801..13594)
DNA (1794bp) protein (598aa)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
fucI; L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase n=1 Tax=Coprococcus sp. HPP0074 RepID=S2YP20_9FIRM
L3_108_000G1_scaffold_223_12
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13591..14871)
DNA (1281bp) protein (427aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=E9RTS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75426.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
oxidoreductase
L3_108_000G1_scaffold_223_13
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14859..16196)
DNA (1338bp) protein (446aa)
alpha-L-fucosidase (EC:3.2.1.51)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YLE1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD65166.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
L3_108_000G1_scaffold_223_14
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16231..17094)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTS4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75425.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
sugar ABC transporter permease
L3_108_000G1_scaffold_223_15
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17091..18020)
DNA (930bp) protein (310aa)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=E9RTS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG88107.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
sugar ABC transporter permease
L3_108_000G1_scaffold_223_16
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18109..19422)
DNA (1314bp) protein (438aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTS2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75423.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
ABC transporter binding protein
L3_108_000G1_scaffold_223_17
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19582..20871)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTS1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75422.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
L3_108_000G1_scaffold_223_18
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20858..21622)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTS0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75421.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
Two component transcriptional regulator, AraC family
L3_108_000G1_scaffold_223_19
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21597..23303)
DNA (1707bp) protein (569aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2Z5C6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD65172.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
helicase Ski2
L3_108_000G1_scaffold_223_20
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23695..24312)
DNA (618bp) protein (206aa)
Pyrrolidone-carboxylate peptidase {ECO:0000256|HAMAP-Rule:MF_00417}; EC=3.4.19.3 {ECO:0000256|HAMAP-Rule:MF_00417};; 5-oxoprolyl-peptidase {ECO:0000256|HAMAP-Rule:MF_00417}; Pyroglutamyl-peptidase I {ECO:0000256|HAMAP-Rule:MF_00417}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
Pyrrolidone-carboxylate peptidase n=3 Tax=Lachnospiraceae RepID=E9RTR7_9FIRM
pyrrolidone-carboxylate peptidase
L3_108_000G1_scaffold_223_21
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24342..24821)
DNA (480bp) protein (160aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039794}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658, ECO:0000256|SAAS:SAAS00039776};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Ribosomal RNA large subunit methyltransferase H n=3 Tax=Lachnospiraceae RepID=E9RTR6_9FIRM
conserved hypothetical protein TIGR00246
L3_108_000G1_scaffold_223_22
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25000..26388)
DNA (1389bp) protein (463aa)
glutamate synthase (NADPH), homotetrameric (EC:1.4.1.13 1.4.1.14)
Glutamate synthase n=4 Tax=Lachnospiraceae RepID=E9RTR5_9FIRM
Glutamate synthase {ECO:0000313|EMBL:EGG88115.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
L3_108_000G1_scaffold_223_23
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26388..27275)
DNA (888bp) protein (296aa)
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.97.-.- 1.18.1.2)
Uncharacterized protein n=4 Tax=Lachnospiraceae RepID=E9RTR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75415.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
L3_108_000G1_scaffold_223_24
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27600..28781)
DNA (1182bp) protein (394aa)
NADPH-dependent butanol dehydrogenase n=2 Tax=Lachnospiraceae RepID=E9RTR3_9FIRM
NADPH-dependent butanol dehydrogenase {ECO:0000313|EMBL:EGC75414.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
Alcohol dehydrogenase, class IV
L3_108_000G1_scaffold_223_25
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28907..30142)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75413.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
Tetratricopeptide repeat.
L3_108_000G1_scaffold_223_26
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30157..30996)
DNA (840bp) protein (280aa)
methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTR1_9FIRM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
L3_108_000G1_scaffold_223_27
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31010..32680)
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Formate-tetrahydrofolate ligase (EC:6.3.4.3)
Formate--tetrahydrofolate ligase n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AIP2_9FIRM
L3_108_000G1_scaffold_223_28
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32723..35215)
DNA (2493bp) protein (831aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RTQ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75410.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
DNA translocase FtsK
L3_108_000G1_scaffold_223_29
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35304..35993)
DNA (690bp) protein (230aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=E9RTQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGC75409.1}; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
Protease subunit of ATP-dependent Clp proteases
L3_108_000G1_scaffold_223_30
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36206..37489)
DNA (1284bp) protein (428aa)
O-acetylhomoserine sulfhydrolase (EC:2.5.1.49)
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YL18_9FIRM
O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase {ECO:0000313|EMBL:EPD65183.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
Displaying items 1-30 of 91 in total

View Taxonomy