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L3_108_000G1_scaffold_237

Search features with annotation key words

Displaying items 1-30 of 140 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_237_1
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..1090)
DNA (1089bp) protein (363aa)
Stage IV sporulation protein A {ECO:0000256|PIRNR:PIRNR007466}; EC=3.6.1.3 {ECO:0000256|PIRNR:PIRNR007466};; Coat morphogenetic protein SpoIVA {ECO:0000256|PIRNR:PIRNR007466}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Stage IV sporulation protein A n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A726_9CLOT
stage IV sporulation protein A
L3_108_000G1_scaffold_237_2
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1133..2656)
DNA (1524bp) protein (508aa)
PF12673 domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AAU1_9CLOT
PF12673 domain protein {ECO:0000313|EMBL:CCX38979.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_108_000G1_scaffold_237_3
unknown

Not on your lists

comp(3002..3178)
DNA (177bp) protein (59aa)

This feature has no annotations

L3_108_000G1_scaffold_237_4
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(3345..3998)
DNA (654bp) protein (218aa)
Thiamine diphosphokinase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YRN4_9FIRM
Thiamine diphosphokinase {ECO:0000313|EMBL:CDD31251.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
thiamine pyrophosphokinase
L3_108_000G1_scaffold_237_5
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(3968..4870)
DNA (903bp) protein (301aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZLC6_9FIRM
ribosome small subunit-dependent GTPase A
L3_108_000G1_scaffold_237_6
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4880..6967)
DNA (2088bp) protein (696aa)
Putative serine/threonine-protein kinase PrkC n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A721_9CLOT
Putative serine/threonine-protein kinase PrkC {ECO:0000313|EMBL:CCX38975.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
serine/threonine protein kinase with PASTA sensor(s)
L3_108_000G1_scaffold_237_7
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(6991..7722)
DNA (732bp) protein (244aa)
Phosphoprotein phosphatase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YIM0_9FIRM
Phosphoprotein phosphatase {ECO:0000313|EMBL:CDD31254.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
protein serine/threonine phosphatase
L3_108_000G1_scaffold_237_8
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7723..8742)
DNA (1020bp) protein (340aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A8E6_9CLOT
radical SAM enzyme, Cfr family
L3_108_000G1_scaffold_237_9
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8771..10099)
DNA (1329bp) protein (443aa)
Ribosomal RNA small subunit methyltransferase B {ECO:0000256|SAAS:SAAS00013752}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00276898};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Ribosomal RNA small subunit methyltransferase B n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AD81_9CLOT
sun protein
L3_108_000G1_scaffold_237_10
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10101..11018)
DNA (918bp) protein (306aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043680}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Methionyl-tRNA formyltransferase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AHZ1_9CLOT
methionyl-tRNA formyltransferase
L3_108_000G1_scaffold_237_11
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11015..11494)
DNA (480bp) protein (160aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Clostridium leptum CAG:27 RepID=R6P505_9CLOT
L3_108_000G1_scaffold_237_12
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11516..13954)
DNA (2439bp) protein (813aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Primosomal protein N n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AAT0_9CLOT
primosomal protein N'
L3_108_000G1_scaffold_237_13
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13973..14185)
DNA (213bp) protein (71aa)
rpoZ; DNA-directed RNA polymerase subunit omega (EC:2.7.7.6)
RNA polymerase Rpb6 n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A8E1_9CLOT
RNA polymerase Rpb6 {ECO:0000313|EMBL:CCX38968.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_108_000G1_scaffold_237_14
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(14178..14786)
DNA (609bp) protein (203aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
guanylate kinase (EC:2.7.4.8)
Guanylate kinase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YBG4_9FIRM
L3_108_000G1_scaffold_237_15
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14894..15160)
DNA (267bp) protein (89aa)
UPF0296 protein HMPREF0372_00803 n=3 Tax=Clostridiales RepID=G9YMT1_9FIRM
UPF0296 protein HMPREF0372_00803 {ECO:0000256|HAMAP-Rule:MF_01503}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_108_000G1_scaffold_237_16
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(15182..16069)
DNA (888bp) protein (296aa)
TIGR00255 family protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZLE0_9FIRM
TIGR00255 family protein {ECO:0000313|EMBL:CDD31267.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
conserved hypothetical protein TIGR00255
L3_108_000G1_scaffold_237_17
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16250..16624)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AAS4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX38964.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_108_000G1_scaffold_237_18
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16566..17402)
DNA (837bp) protein (279aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
rluB; ribosomal large subunit pseudouridine synthase B (EC:5.4.99.12)
RNA pseudouridine synthase n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003770902
L3_108_000G1_scaffold_237_19
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17482..18609)
DNA (1128bp) protein (376aa)
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Clostridium sp. MSTE9 RepID=J0MZM1_9CLOT
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:EJF39894.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
peptidase S11 D-alanyl-D-alanine carboxypeptidase 1
L3_108_000G1_scaffold_237_20
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(18657..19064)
DNA (408bp) protein (136aa)
Sporulation protein YtfJ n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y5K0_9FIRM
Sporulation protein YtfJ {ECO:0000313|EMBL:CDD31218.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
sporulation protein YtfJ
L3_108_000G1_scaffold_237_21
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19069..19716)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VPG8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO62855.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_108_000G1_scaffold_237_22
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19713..20288)
DNA (576bp) protein (192aa)
Segregation and condensation protein B n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AAR9_9CLOT
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
segregation and condensation protein B
L3_108_000G1_scaffold_237_23
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20281..20988)
DNA (708bp) protein (236aa)
ScpA/B protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A8D0_9CLOT
ScpA/B protein {ECO:0000313|EMBL:CCX38958.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
condensin subunit ScpA
L3_108_000G1_scaffold_237_24
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21010..21717)
DNA (708bp) protein (236aa)
Peptidase M50 family n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AD61_9CLOT
Peptidase M50 family {ECO:0000313|EMBL:CCX38957.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Zn-dependent proteases
L3_108_000G1_scaffold_237_25
unknown

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comp(21695..21862)
DNA (168bp) protein (56aa)

This feature has no annotations

L3_108_000G1_scaffold_237_26
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22246..22944)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5ABP0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX38467.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_108_000G1_scaffold_237_27
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23562..24539
DNA (978bp) protein (326aa)
Replication initiation and membrane attachment protein DnaB/DnaD family n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A197_9CLOT
Replication initiation and membrane attachment protein DnaB/DnaD family {ECO:0000313|EMBL:CCX36750.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
DnaD domain protein
L3_108_000G1_scaffold_237_28
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

24597..25586
DNA (990bp) protein (330aa)
ATP-binding protein n=1 Tax=Clostridium sporosphaeroides RepID=UPI00036D0B8E
IstB-like ATP-binding protein {ECO:0000313|EMBL:CDD28622.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
DNA replication protein
L3_108_000G1_scaffold_237_29
Clostridium sp. CAG:678, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25630..26667
DNA (1038bp) protein (346aa)
Transglutaminase domain protein n=1 Tax=Clostridium sp. CAG:678 RepID=R5L3I3_9CLOT
Transglutaminase domain protein {ECO:0000313|EMBL:CCY67861.1}; TaxID=1262831 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:678.;"
L3_108_000G1_scaffold_237_30
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26805..28496)
DNA (1692bp) protein (564aa)
oligoendopeptidase F n=1 Tax=Butyrivibrio sp. AE3009 RepID=UPI0003B6814C
oligoendopeptidase, M3 family
Tax=BJP_IG2157_Clostridiales_52_13
Displaying items 1-30 of 140 in total

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