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L3_108_000G1_scaffold_253

Search features with annotation key words

Displaying items 1-30 of 137 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_253_1
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..268)
DNA (267bp) protein (89aa)
Peptide chain release factor 3 n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PHP0_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
peptide chain release factor 3
L3_108_000G1_scaffold_253_2
unknown

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419..949
DNA (531bp) protein (177aa)

This feature has no annotations

L3_108_000G1_scaffold_253_3
unknown

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946..1113
DNA (168bp) protein (56aa)

This feature has no annotations

L3_108_000G1_scaffold_253_4
unknown

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1162..1656
DNA (495bp) protein (165aa)

This feature has no annotations

L3_108_000G1_scaffold_253_5
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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comp(1716..2192)
DNA (477bp) protein (159aa)
Divergent PAP2 family n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y7H0_9FIRM
Divergent PAP2 family {ECO:0000313|EMBL:CDD29865.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
hypothetical protein
L3_108_000G1_scaffold_253_6
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2367..3017
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A8G7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX37397.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
conserved hypothetical protein
L3_108_000G1_scaffold_253_7
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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3001..3813
DNA (813bp) protein (271aa)
Predicted TIM-barrel fold metal-dependent hydrolase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZHC6_9FIRM
Predicted TIM-barrel fold metal-dependent hydrolase {ECO:0000313|EMBL:CDD29862.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
TIM-barrel fold metal-dependent hydrolase
L3_108_000G1_scaffold_253_8
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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3947..4426
DNA (480bp) protein (160aa)
DNA-binding helix-turn-helix protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y5J0_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:CDD31208.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
Predicted transcriptional regulators
L3_108_000G1_scaffold_253_9
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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4549..5925
DNA (1377bp) protein (459aa)
MATE efflux family protein n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y5S2_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDD31293.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
MATE efflux family protein
L3_108_000G1_scaffold_253_10
bacterium YEK0313, Bacteria

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6052..6522
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Asticcacaulis sp. AC402 RepID=V4NKS4_9CAUL
Acetyltransferase YpeA {ECO:0000313|EMBL:CEJ11583.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
GCN5-like N-acetyltransferase
L3_108_000G1_scaffold_253_11
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6656..8032
DNA (1377bp) protein (459aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
asnS; asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6S6_9CLOT
L3_108_000G1_scaffold_253_12
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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8230..9516
DNA (1287bp) protein (429aa)
Alanine-glyoxylate amino-transferase n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6YRJ0_9FIRM
Alanine-glyoxylate amino-transferase {ECO:0000313|EMBL:CDD31206.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
transcriptional regulator
L3_108_000G1_scaffold_253_13
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9542..10963)
DNA (1422bp) protein (474aa)
Sporulation integral membrane protein YtvI n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6T0_9CLOT
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:CCX37454.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
sporulation integral membrane protein YtvI
L3_108_000G1_scaffold_253_14
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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10965..12470
DNA (1506bp) protein (502aa)
Glycosidase n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TG02_9FIRM
Glycosidase {ECO:0000313|EMBL:CDC71165.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
fructan beta-fructosidase
L3_108_000G1_scaffold_253_15
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12609..13568
DNA (960bp) protein (320aa)
Putative stage III sporulation protein AA n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AD40_9CLOT
Putative stage III sporulation protein AA {ECO:0000313|EMBL:CCX38942.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
stage III sporulation protein AA
L3_108_000G1_scaffold_253_16
Eubacterium sp. CAG:202, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13537..13977
DNA (441bp) protein (147aa)
Stage III sporulation protein AB n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N2U0_9FIRM
Stage III sporulation protein AB {ECO:0000313|EMBL:CDC02549.1}; TaxID=1262884 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:202.;"
Stage III sporulation protein AB (spore_III_AB).
L3_108_000G1_scaffold_253_17
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14003..14197
DNA (195bp) protein (65aa)
Stage III sporulation protein AC n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EFZ5_9CLOT
Stage III sporulation protein AC {ECO:0000313|EMBL:EEG29606.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
stage III sporulation protein AC
L3_108_000G1_scaffold_253_18
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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14194..14583
DNA (390bp) protein (130aa)
Putative stage III sporulation protein AD (Fragment) n=2 Tax=Oscillibacter RepID=U2QGG1_9FIRM
Putative stage III sporulation protein AD {ECO:0000313|EMBL:CDD27686.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
stage III sporulation protein AD
L3_108_000G1_scaffold_253_19
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14580..15689
DNA (1110bp) protein (370aa)
Putative stage III sporulation protein AE n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AHW6_9CLOT
Putative stage III sporulation protein AE {ECO:0000313|EMBL:CCX38946.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Sporulation stage III protein AE
L3_108_000G1_scaffold_253_20
unknown

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15682..16149
DNA (468bp) protein (156aa)

This feature has no annotations

L3_108_000G1_scaffold_253_21
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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16168..16728
DNA (561bp) protein (187aa)
Putative stage III sporulation protein AG n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZB28_9FIRM
Putative stage III sporulation protein AG {ECO:0000313|EMBL:CDD27677.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
stage III sporulation protein AG
L3_108_000G1_scaffold_253_22
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16756..17415
DNA (660bp) protein (220aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VX45_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDO60342.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
hypothetical protein
L3_108_000G1_scaffold_253_23
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

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17596..18024
DNA (429bp) protein (143aa)
N utilization substance protein B homolog n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6Y1I2_9FIRM
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
NusB antitermination factor
L3_108_000G1_scaffold_253_24
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18017..18967
DNA (951bp) protein (317aa)
peptidase M22 n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035F028B
Peptidase, M22 family {ECO:0000313|EMBL:EJF39974.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
peptidase M22 glycoprotease
L3_108_000G1_scaffold_253_25
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18955..20163
DNA (1209bp) protein (403aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Exodeoxyribonuclease 7 large subunit n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AHX0_9CLOT
exodeoxyribonuclease VII large subunit
L3_108_000G1_scaffold_253_26
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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20165..20353
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AZ88_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOS79956.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
L3_108_000G1_scaffold_253_27
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20566..21636
DNA (1071bp) protein (357aa)
Polyprenyl synthetase n=2 Tax=Clostridium RepID=A7VX40_9CLOT
Polyprenyl synthetase {ECO:0000313|EMBL:EDO60337.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
polyprenyl synthetase
L3_108_000G1_scaffold_253_28
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21633..22505
DNA (873bp) protein (291aa)
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AAR3_9CLOT
Pseudouridine synthase {ECO:0000313|EMBL:CCX38954.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
L3_108_000G1_scaffold_253_29
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22549..23004)
DNA (456bp) protein (152aa)
Regulatory protein MarR n=1 Tax=Clostridium sp. CAG:1013 RepID=R5AI31_9CLOT
Regulatory protein MarR {ECO:0000313|EMBL:CCX39006.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
transcriptional regulator
L3_108_000G1_scaffold_253_30
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23072..23659)
DNA (588bp) protein (196aa)
Acetyltransferase (GNAT) domain protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MRW3_CLOSA
acetyltransferase (GNAT) domain protein
Acetyltransferase (GNAT) domain protein {ECO:0000313|EMBL:AGX43524.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
Displaying items 1-30 of 137 in total

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