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L3_108_000G1_scaffold_280

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_280_1
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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464..1807
DNA (1344bp) protein (448aa)
Branched-chain amino acid transport system II carrier protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BCL2_9FIRM
Branched-chain amino acid transport system II carrier protein {ECO:0000313|EMBL:EGG81431.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
brnQ; branched-chain amino acid transport system II carrier protein
L3_108_000G1_scaffold_280_2
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(1840..3975)
DNA (2136bp) protein (712aa)
isoamylase (EC:3.2.1.-)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H0R0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY23048.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
L3_108_000G1_scaffold_280_3
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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4156..5301
DNA (1146bp) protein (382aa)
lactaldehyde reductase (EC:1.1.1.77)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H0A6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY23050.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
L3_108_000G1_scaffold_280_4
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(5628..5894)
DNA (267bp) protein (89aa)
Putative septation protein SpoVG n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GZE1_9FIRM
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
stage V sporulation protein G
L3_108_000G1_scaffold_280_5
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5921..7039)
DNA (1119bp) protein (373aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|SAAS:SAAS00083544}; EC=2.7.7.27 {ECO:0000256|SAAS:SAAS00083544};; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
ADP-glucose pyrophosphorylase (EC:2.7.7.27)
Putative glucose-1-phosphate adenylyltransferase, GlgD subunit n=1 Tax=Clostridium sp. KLE 1755 RepID=U2B3M6_9CLOT
L3_108_000G1_scaffold_280_6
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(7036..8310)
DNA (1275bp) protein (425aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
glgC1; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GUU7_9FIRM
L3_108_000G1_scaffold_280_7
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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8754..10139
DNA (1386bp) protein (462aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GZD6_9FIRM
L3_108_000G1_scaffold_280_8
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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10376..11524
DNA (1149bp) protein (383aa)
DnaD domain-containing protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K7T7_9FIRM
DnaD domain-containing protein {ECO:0000313|EMBL:EGN41387.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_108_000G1_scaffold_280_9
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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11567..12565
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H8C0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY21162.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
dnaC1; DNA replication protein DnaC1
L3_108_000G1_scaffold_280_10
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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12596..13795
DNA (1200bp) protein (400aa)
prsA1; ribose-phosphate pyrophosphokinase PrsA1 (EC:2.7.6.1)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H8S5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY21161.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
L3_108_000G1_scaffold_280_11
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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13811..14626
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002EB4FD3
Uridine kinase {ECO:0000313|EMBL:AJG99192.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
hypothetical protein
L3_108_000G1_scaffold_280_12
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(14770..14982)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H0C9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY23090.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
L3_108_000G1_scaffold_280_13
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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15569..16348
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H4X3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY23089.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
MecA family protein
L3_108_000G1_scaffold_280_14
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16507..16749)
DNA (243bp) protein (81aa)
Formate acetyltransferase n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9MXM3_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:EOS75456.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
formate C-acetyltransferase glycine radical
L3_108_000G1_scaffold_280_15
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16774..16974)
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9MWM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS75455.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
L3_108_000G1_scaffold_280_16
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16990..19044)
DNA (2055bp) protein (685aa)
formate acetyltransferase (EC:2.3.1.54)
Formate acetyltransferase n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9MWK3_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:EOS75454.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
L3_108_000G1_scaffold_280_17
unknown

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comp(19041..19220)
DNA (180bp) protein (60aa)

This feature has no annotations

L3_108_000G1_scaffold_280_18
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(19484..19675)
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H2D0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY22229.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
Domain of unknown function (DUF1858).
L3_108_000G1_scaffold_280_19
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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19893..20666
DNA (774bp) protein (258aa)
Pyruvate formate-lyase-activating enzyme {ECO:0000256|RuleBase:RU362053}; EC=1.97.1.4 {ECO:0000256|RuleBase:RU362053};; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
Pyruvate formate-lyase 1-activating enzyme n=2 Tax=Lachnospiraceae bacterium 10-1 RepID=R9MWK6_9FIRM
L3_108_000G1_scaffold_280_20
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

20765..20935
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GYB0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY22228.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
4Fe-4S binding domain.
L3_108_000G1_scaffold_280_21
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(21203..21877)
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5HBF2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY22227.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
Predicted transcriptional regulators
L3_108_000G1_scaffold_280_22
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(21988..23331)
DNA (1344bp) protein (448aa)
Replicative DNA helicase n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5HBV3_9FIRM
Replicative DNA helicase {ECO:0000313|EMBL:CCY22226.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
replicative DNA helicase
L3_108_000G1_scaffold_280_23
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(23373..23819)
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GXV9_9FIRM
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
LSU ribosomal protein L9P
L3_108_000G1_scaffold_280_24
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(23816..25870)
DNA (2055bp) protein (685aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5H2C6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY22224.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
DHH domain-containing protein
L3_108_000G1_scaffold_280_25
unknown

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comp(26016..27311)
DNA (1296bp) protein (432aa)

This feature has no annotations

L3_108_000G1_scaffold_280_26
Thermoanaerobacterium thermosaccharolyticum, Thermoanaerobacterium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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comp(27370..28083)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB 9385 / NCA 3814) RepID=D9TP07_THETC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADL67745.1}; Flags: Precursor;; TaxID=580327 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Thermoanaerobacterium.;" source="Thermoanaerobacterium thermosaccharolyticum (strain ATCC 7956 / DSM; 571 / NCIB 9385 / NCA 3814) (Clostridium thermosaccharolyticum).;"
L3_108_000G1_scaffold_280_27
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28283..29671)
DNA (1389bp) protein (463aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9J1T0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS28109.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
Antirepressor regulating drug resistance, predicted signal transduction N-terminal membrane component
L3_108_000G1_scaffold_280_28
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29658..30029)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9J1Y2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS28108.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
Predicted transcriptional regulator
L3_108_000G1_scaffold_280_29
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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comp(30180..30443)
DNA (264bp) protein (88aa)
30S ribosomal protein S18 n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GYA6_9FIRM
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
rpsR; 30S ribosomal protein S18
L3_108_000G1_scaffold_280_30
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

Not on your lists

comp(30505..30969)
DNA (465bp) protein (155aa)
Single-stranded DNA-binding protein n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5HBE8_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|RuleBase:RU000524}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
ssb1; single-stranded DNA binding protein Ssb1
Displaying items 1-30 of 90 in total

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