ggKbase home page

L3_108_000G1_scaffold_308

Search features with annotation key words

Displaying items 1-30 of 124 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_308_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

144..2021
DNA (1878bp) protein (626aa)
Putative Glycerophosphoryl diester phosphodiesterase family protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FP50_9CLOT
glycerophosphoryl diester phosphodiesterase family protein
Glycerophosphoryl diester phosphodiesterase family protein {ECO:0000313|EMBL:AIY83098.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2471..3022
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WHL6_9CLOT
putative membrane protein
Putative membrane protein {ECO:0000313|EMBL:AIY83932.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3248..5413
DNA (2166bp) protein (722aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WI28_9CLOT
PPIC-type PPIASE domain protein
PPIC-type PPIASE domain protein {ECO:0000313|EMBL:AIY84620.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_4
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

6688..11244
DNA (4557bp) protein (1519aa)
SIR2-like domain protein n=17 Tax=Clostridium difficile RepID=T2ZDL0_CLODI
Uncharacterized protein {ECO:0000313|EMBL:ESL13878.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
hypothetical protein
L3_108_000G1_scaffold_308_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11326..11736)
DNA (411bp) protein (137aa)
Uncharacterized protein n=2 Tax=Clostridium botulinum B RepID=B2TL46_CLOBB
LAGLIDADG-like domain protein
LAGLIDADG-like domain protein {ECO:0000313|EMBL:AIY83174.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_6
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11921..12319
DNA (399bp) protein (133aa)
Cmp/dcmp deaminase zinc-binding protein n=1 Tax=Clostridium intestinale URNW RepID=U2NN49_9CLOT
Cmp/dcmp deaminase zinc-binding protein {ECO:0000313|EMBL:ERK30588.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
deaminase
L3_108_000G1_scaffold_308_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12437..13402
DNA (966bp) protein (322aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
tRNA-dihydrouridine synthase n=2 Tax=Clostridium botulinum B RepID=B2TLM0_CLOBB
dihydrouridine synthase family protein
L3_108_000G1_scaffold_308_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13408..14556
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MQL7_CLOSA
putative lysine-N-methylase
Putative lysine-N-methylase {ECO:0000313|EMBL:AIY83490.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14627..15391)
DNA (765bp) protein (255aa)
Transcriptional regulator, DeoR family n=2 Tax=Clostridium botulinum B RepID=B2TPM8_CLOBB
DeoR faimly transcriptional regulator {ECO:0000313|EMBL:KJU71141.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
L3_108_000G1_scaffold_308_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15513..16307
DNA (795bp) protein (265aa)
Phosphatase YidA n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UXM0_CLOBA
HAD hydrolase, IIB family protein
HAD hydrolase, IIB family protein {ECO:0000313|EMBL:AIY85017.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16360..16824)
DNA (465bp) protein (155aa)
Transcription elongation factor GreA n=1 Tax=Clostridium colicanis 209318 RepID=N9XRZ7_9CLOT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
greA; transcription elongation factor GreA domain protein
L3_108_000G1_scaffold_308_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16963..17487
DNA (525bp) protein (175aa)
RibD domain protein n=1 Tax=Clostridium botulinum NCTC 2916 RepID=B1Q8X3_CLOBO
dihydrofolate reductase family protein
Dihydrofolate reductase family protein {ECO:0000313|EMBL:AIY82550.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17661..18050
DNA (390bp) protein (130aa)
Uncharacterized protein n=2 Tax=Clostridium butyricum RepID=B1R1Z0_CLOBU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84546.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18106..18432)
DNA (327bp) protein (109aa)
MarR family transcriptional regulator n=1 Tax=Clostridium tyrobutyricum RepID=UPI00030EF46E
hxlR-like helix-turn-helix family protein
HxlR-like helix-turn-helix family protein {ECO:0000313|EMBL:AIY83881.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18574..18978
DNA (405bp) protein (135aa)
Pyridoxamine 5-phosphate oxidase-related FMN-binding protein n=2 Tax=Clostridium RepID=U5RPL4_9CLOT
pyridoxamine 5'-phosphate oxidase family protein
Pyridoxamine 5'-phosphate oxidase family protein {ECO:0000313|EMBL:AIY83891.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19183..20511
DNA (1329bp) protein (443aa)
Uncharacterized protein n=3 Tax=Clostridium acetobutylicum RepID=Q97L12_CLOAB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83382.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_17
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20675..21823
DNA (1149bp) protein (383aa)
fucO; lactaldehyde reductase (EC:1.1.1.77)
Lactaldehyde reductase {ECO:0000313|EMBL:AIY83069.1}; EC=1.1.1.77 {ECO:0000313|EMBL:AIY83069.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Lactaldehyde reductase n=3 Tax=Clostridium perfringens RepID=Q0TS98_CLOP1
L3_108_000G1_scaffold_308_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21882..22754)
DNA (873bp) protein (291aa)
Transcriptional regulator, AraC family n=4 Tax=Clostridium perfringens RepID=Q0TS97_CLOP1
helix-turn-helix domain protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AIY83759.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22903..24696
DNA (1794bp) protein (598aa)
fucI; L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L-fucose isomerase n=3 Tax=Clostridium perfringens RepID=Q0TS96_CLOP1
L3_108_000G1_scaffold_308_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24717..26219
DNA (1503bp) protein (501aa)
L-fuculokinase n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RCT4_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83526.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26213..26650
DNA (438bp) protein (146aa)
c10; fucose mutarotase (EC:5.1.3.n2)
Fucose mutarotase {ECO:0000313|EMBL:AIY82616.1}; EC=5.1.3.29 {ECO:0000313|EMBL:AIY82616.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Fucose operon protein FucU n=2 Tax=Clostridium perfringens RepID=Q0TS94_CLOP1
L3_108_000G1_scaffold_308_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26679..27383
DNA (705bp) protein (235aa)
L-fuculose phosphate aldolase n=6 Tax=Clostridium perfringens RepID=Q0TS93_CLOP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83221.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27404..28720
DNA (1317bp) protein (439aa)
L-fucose:H+ symporter permease n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TS92_CLOP1
fucP; L-fucose:H+ symporter permease
L-fucose:H+ symporter permease {ECO:0000313|EMBL:AIY83706.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28724..29332)
DNA (609bp) protein (203aa)
Uridine kinase n=1 Tax=Firmicutes bacterium CAG:631 RepID=R5V3H1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJU71127.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
phosphoribulokinase / Uridine kinase family protein
L3_108_000G1_scaffold_308_25
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29530..30843
DNA (1314bp) protein (438aa)
Amidohydrolase family protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TRK7_CLOP1
amidohydrolase family protein
Amidohydrolase family protein {ECO:0000313|EMBL:AIY85049.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30993..31496
DNA (504bp) protein (168aa)
Acetyltransferase, GNAT family n=2 Tax=Clostridium botulinum RepID=C5VRZ5_CLOBO
acetyltransferase family protein
Acetyltransferase family protein {ECO:0000313|EMBL:AIY83844.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_27
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31536..32159
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WKW4_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY82648.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32200..33132
DNA (933bp) protein (311aa)
DNA polymerase III subunit epsilon n=2 Tax=Clostridium botulinum B RepID=B2TM95_CLOBB
exonuclease family protein
Exonuclease family protein {ECO:0000313|EMBL:AIY82883.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_29
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33248..33793
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CPX9_CLOPF
nitroreductase family protein
Nitroreductase family protein {ECO:0000313|EMBL:AIY82912.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_308_30
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33888..34682
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0CH00_CLOSO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84403.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Displaying items 1-30 of 124 in total

View Taxonomy