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L3_108_000G1_scaffold_354

Search features with annotation key words

Displaying items 1-30 of 85 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_354_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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183..1043
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UHB7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68232.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ATPase AAA
L3_108_000G1_scaffold_354_2
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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1062..2075
DNA (1014bp) protein (338aa)
Predicted oxidoreductase aldo/keto reductase family with a ferredoxin domain n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RLS3_9FIRM
Predicted oxidoreductase aldo/keto reductase family with a ferredoxin domain {ECO:0000313|EMBL:CDC46264.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
oxidoreductase
L3_108_000G1_scaffold_354_3
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2168..3718)
DNA (1551bp) protein (517aa)
1-pyrroline-5-carboxylate dehydrogenase (EC:1.5.1.12)
Putative delta-1-pyrroline-5-carboxylate dehydrogenase n=2 Tax=Coprococcus RepID=C0BAA0_9FIRM
Putative delta-1-pyrroline-5-carboxylate dehydrogenase {ECO:0000313|EMBL:CDB84932.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
L3_108_000G1_scaffold_354_4
Candidatus Arthromitus sp. SFB-mouse, Candidatus Arthromitus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4009..4941
DNA (933bp) protein (311aa)
Transcriptional regulator n=1 Tax=Arthromitus sp. (strain SFB-mouse-Japan) RepID=F9VKA0_ARTSS
N-acetylmannosamine kinase
Transcriptional regulator {ECO:0000313|EMBL:BAK56558.1}; TaxID=1029718 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Candidatus Arthromitus.;" source="Arthromitus sp. (strain SFB-mouse-Japan).;"
L3_108_000G1_scaffold_354_5
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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4934..5536
DNA (603bp) protein (201aa)
Rubredoxin n=1 Tax=Anaerostipes caccae DSM 14662 RepID=B0MA39_9FIRM
Rubredoxin {ECO:0000313|EMBL:EDR98880.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
Rubrerythrin
L3_108_000G1_scaffold_354_6
Lachnospiraceae bacterium CAG:215, Clostridiales, Clostridia, Firmicutes, Bacteria

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5675..6130
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium CAG:215 RepID=R6EKV4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB01198.1}; TaxID=1262985 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:215.;"
Transcriptional regulators
L3_108_000G1_scaffold_354_7
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6123..7508
DNA (1386bp) protein (462aa)
MATE efflux family protein n=2 Tax=Clostridium RepID=A7VWQ8_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:CDC04309.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
putative efflux protein, MATE family
L3_108_000G1_scaffold_354_8
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7510..8265
DNA (756bp) protein (252aa)
Methyltransferase (EC:2.1.1.-)
Methyltransferase domain protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N670_9FIRM
Methyltransferase {ECO:0000313|EMBL:EXM39595.1}; TaxID=1341156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus SY3.;"
L3_108_000G1_scaffold_354_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8304..8888
DNA (585bp) protein (195aa)
Bacterial transferase hexapeptide family protein n=104 Tax=Clostridium difficile RepID=T2U1D6_CLODI
Bacterial transferase hexapeptide family protein {ECO:0000313|EMBL:EQI84799.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
sugar O-acetyltransferase
L3_108_000G1_scaffold_354_10
Lachnospiraceae bacterium A2, Clostridiales, Clostridia, Firmicutes, Bacteria

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8948..9463
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A2 RepID=R9K9B8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS42821.1}; TaxID=397290 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A2.;"
DNA topology modulation protein FlaR
L3_108_000G1_scaffold_354_11
Dorea sp. CAG:317, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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9448..10050
DNA (603bp) protein (201aa)
HD domain protein n=1 Tax=Dorea sp. CAG:317 RepID=R6WMV2_9FIRM
HD domain protein {ECO:0000313|EMBL:CDD08229.1}; TaxID=1262873 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:317.;"
hydrolases of HD superfamily
L3_108_000G1_scaffold_354_12
Blautia hydrogenotrophica CAG:147, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10128..10958)
DNA (831bp) protein (277aa)
Uncharacterized protein n=2 Tax=Blautia RepID=R5C9Y8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX60481.1}; TaxID=1263061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia hydrogenotrophica CAG:147.;"
delta-lactam-biosynthetic de-N-acetylase
L3_108_000G1_scaffold_354_13
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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11124..12041
DNA (918bp) protein (306aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
tRNA-dihydrouridine synthase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M6V1_9FIRM
tRNA-U20a,U20b-dihydrouridine synthase
L3_108_000G1_scaffold_354_14
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12075..12599
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JSJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE66611.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
Predicted flavin-nucleotide-binding protein
L3_108_000G1_scaffold_354_15
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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12637..12981
DNA (345bp) protein (115aa)
Sporulation protein YqfC n=2 Tax=Dorea sp. 5-2 RepID=R9NAB0_9FIRM
Sporulation protein YqfC {ECO:0000313|EMBL:EOS79891.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
sporulation protein YqfC
L3_108_000G1_scaffold_354_16
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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12975..14210
DNA (1236bp) protein (412aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AI89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG90288.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Putative stage IV sporulation protein YqfD.
L3_108_000G1_scaffold_354_17
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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14194..15180
DNA (987bp) protein (329aa)
KH domain protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G5H1_9FIRM
KH domain protein {ECO:0000313|EMBL:EDR47021.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L3_108_000G1_scaffold_354_18
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15182..15700
DNA (519bp) protein (173aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
Endoribonuclease YbeY n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NAX0_CLOSV
conserved hypothetical protein TIGR00043
L3_108_000G1_scaffold_354_19
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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15715..17364
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SEL7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC58440.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L3_108_000G1_scaffold_354_20
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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17375..18187
DNA (813bp) protein (271aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 9_1_43BFAA RepID=F3AI94_9FIRM
phosphomethylpyrimidine kinase type-1
L3_108_000G1_scaffold_354_21
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18233..18613
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BW17_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG75843.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
hypothetical protein
L3_108_000G1_scaffold_354_22
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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18633..18866
DNA (234bp) protein (78aa)
UPF0291 protein HMPREF0490_00984 n=4 Tax=Lachnospiraceae RepID=E9RU53_9FIRM
UPF0291 protein HMPREF0987_00170 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
hypothetical protein
L3_108_000G1_scaffold_354_23
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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18910..19389
DNA (480bp) protein (160aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Coprococcus RepID=R6MGX8_9FIRM
L3_108_000G1_scaffold_354_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19409..19588
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3X6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK98219.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_108_000G1_scaffold_354_25
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

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19855..20508
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00036756FF
Camelysin metallo-endopeptidase {ECO:0000313|EMBL:CDC92501.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
Camelysin metallo-endopeptidase.
L3_108_000G1_scaffold_354_26
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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20528..21052
DNA (525bp) protein (175aa)
Alternate signal-mediated exported protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B7R4_9FIRM
Alternate signal-mediated exported protein {ECO:0000313|EMBL:EHO30353.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
L3_108_000G1_scaffold_354_27
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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21049..23034
DNA (1986bp) protein (662aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SGM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32492.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
L3_108_000G1_scaffold_354_28
unknown

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23043..24161
DNA (1119bp) protein (373aa)

This feature has no annotations

L3_108_000G1_scaffold_354_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24154..24618
DNA (465bp) protein (155aa)
sipW; signal peptidase I (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Clostridium perfringens F262 RepID=H7CZ00_CLOPF
Signal peptidase I {ECO:0000313|EMBL:EIA16066.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_108_000G1_scaffold_354_30
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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24703..25449
DNA (747bp) protein (249aa)
Uncharacterized protein involved in copper resistance n=1 Tax=Blautia sp. CAG:37 RepID=R7JT80_9FIRM
Uncharacterized protein involved in copper resistance {ECO:0000313|EMBL:CDE67174.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
Uncharacterized protein involved in copper resistance
Displaying items 1-30 of 85 in total

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