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L3_108_000G1_scaffold_442

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_442_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(450..1292)
DNA (843bp) protein (281aa)
Phosphate binding family protein n=135 Tax=Clostridium difficile RepID=T3G508_CLODC
pstS; ABC-type transport system, phosphateextracellular solute-binding protein
ABC-type transport system, phosphate extracellular solute-binding protein {ECO:0000313|EMBL:CDT68770.1}; ABC-type transport system, phosphateextracellular solute-binding protein {ECO:0000313|EMBL:CEJ99921.1}; Putative phosphate ABC transporter%2C substrate-binding protein {ECO:0000313|EMBL:CKG78550.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_108_000G1_scaffold_442_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1544..3328)
DNA (1785bp) protein (595aa)
Oligoendopeptidase F n=2 Tax=Clostridium difficile RepID=T4PET0_CLODI
Putative oligoendopeptidase F, M3B family {ECO:0000313|EMBL:CCL31542.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
oligoendopeptidase F
L3_108_000G1_scaffold_442_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3394..4059)
DNA (666bp) protein (222aa)
MgtC family protein n=203 Tax=Clostridium difficile RepID=C9XRM0_CLODC
putative cation transporter
Putative magnesium transport ATPase, MgtC/SapB family {ECO:0000313|EMBL:CCL31543.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_108_000G1_scaffold_442_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4210..4413)
DNA (204bp) protein (68aa)
Uncharacterized protein n=220 Tax=Clostridium difficile RepID=C9XRM1_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEJ99924.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_108_000G1_scaffold_442_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4449..4958)
DNA (510bp) protein (170aa)
Heptaprenyl diphosphate synthase component I family protein n=214 Tax=Clostridium difficile RepID=C9XRM2_CLODC
hypothetical protein
Heptaprenyl diphosphate synthase component I {ECO:0000313|EMBL:EHJ31735.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_108_000G1_scaffold_442_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5164..5382
DNA (219bp) protein (73aa)
FeoA domain protein n=221 Tax=Clostridium difficile RepID=C9XRM3_CLODC
ferrous iron transport protein A
Ferrous iron transport protein {ECO:0000313|EMBL:CCK99760.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_108_000G1_scaffold_442_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5400..7346
DNA (1947bp) protein (649aa)
Ferrous iron transport protein B n=85 Tax=Clostridium difficile RepID=G6BSD8_CLODI
Ferrous iron transport protein B {ECO:0000313|EMBL:EQG73708.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
feoB2; Ferrous iron transport protein B
L3_108_000G1_scaffold_442_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7506..8561)
DNA (1056bp) protein (352aa)
SIS domain protein n=196 Tax=Clostridium difficile RepID=T3G3M6_CLODC
phosphosugar isomerase
SIS domain protein {ECO:0000313|EMBL:EHJ31732.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_108_000G1_scaffold_442_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8609..9409)
DNA (801bp) protein (267aa)
PTS system mannose/fructose/sorbose IID component family protein n=161 Tax=Clostridium difficile RepID=T3G1U7_CLODC
PTS system mannose/fructose/sorbose IID component family protein {ECO:0000313|EMBL:EQI76128.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
PTS system mannose/fructose/sorbose transporter subunit IID
L3_108_000G1_scaffold_442_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9402..10193)
DNA (792bp) protein (264aa)
PTS system sorbose-specific iic component family protein n=177 Tax=Clostridium difficile RepID=T3G117_CLODC
PTS system mannose/fructose/sorbose transporter subunit IIC
PTS system, mannose/fructose/sorbose IIC component {ECO:0000313|EMBL:CCL23739.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_108_000G1_scaffold_442_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10233..10655)
DNA (423bp) protein (141aa)
PTS system fructose IIA component family protein n=190 Tax=Clostridium difficile RepID=T3G518_CLODC
PTS system, mannose/fructose/sorbose IIAcomponent
PTS system fructose IIA component family protein {ECO:0000313|EMBL:EQE59434.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_108_000G1_scaffold_442_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10671..11168)
DNA (498bp) protein (166aa)
PTS system mannose/fructose/sorbose transporter subunit IIB (EC:2.7.1.69)
PTS system sorbose subIIB component family protein n=189 Tax=Clostridium difficile RepID=T3G5Y5_CLODC
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EHJ30143.1}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_108_000G1_scaffold_442_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11282..14038)
DNA (2757bp) protein (919aa)
AAA domain family protein n=2 Tax=Clostridium difficile RepID=T4PE34_CLODI
AAA domain family protein {ECO:0000313|EMBL:EQG73865.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Transcription antiterminator, PTS operonregulator
L3_108_000G1_scaffold_442_14
unknown

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comp(14120..14227)
DNA (108bp) protein (36aa)
Uncharacterized protein (Fragment) n=8 Tax=Clostridium difficile RepID=T3VDY9_CLODI
L3_108_000G1_scaffold_442_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14636..15439)
DNA (804bp) protein (268aa)
proC1; Pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Pyrroline-5-carboxylate reductase n=2 Tax=Clostridium difficile RepID=T4P845_CLODI
L3_108_000G1_scaffold_442_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15764..18133)
DNA (2370bp) protein (790aa)
Pyruvate formate-lyase {ECO:0000313|EMBL:CCK95803.1}; EC=2.3.1.54 {ECO:0000313|EMBL:CCK95803.1};; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
pflD; Pyruvate formate-lyase (EC:2.3.1.54)
Pyruvate formate lyase family protein n=2 Tax=Clostridium difficile RepID=T4PDZ2_CLODI
L3_108_000G1_scaffold_442_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18138..19046)
DNA (909bp) protein (303aa)
pflE; Pyruvate formate-lyase (activating enzyme) (EC:1.97.1.4)
Glycyl-radical enzyme activating family protein n=172 Tax=Clostridium difficile RepID=T3G1S8_CLODC
Glycyl-radical enzyme activating protein family protein {ECO:0000313|EMBL:EHJ31724.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_108_000G1_scaffold_442_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19391..20470)
DNA (1080bp) protein (360aa)
Serine protease, HrtA family {ECO:0000313|EMBL:CCL31560.1}; EC=3.4.21.- {ECO:0000313|EMBL:CCL31560.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Peptidase S7, Flavivirus NS3 serine protease family protein n=21 Tax=Clostridium difficile RepID=T2X0A7_CLODI
protease
L3_108_000G1_scaffold_442_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20626..21975)
DNA (1350bp) protein (450aa)
pgi; glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=GPI {ECO:0000255|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000255|HAMAP-Rule:MF_00473};; Phosphoglucose isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=PGI {ECO:0000255|HAMAP-Rule:MF_00473};; Phosphohexose isomerase {ECO:0000255|HAMAP-Rule:MF_00473}; Short=PHI {ECO:0000255|HAMAP-Rule:MF_00473};; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
Glucose-6-phosphate isomerase n=73 Tax=Clostridium difficile RepID=G6PI_CLOD6
L3_108_000G1_scaffold_442_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22240..23847)
DNA (1608bp) protein (536aa)
Na+/Pi-cotransporter family protein n=135 Tax=Clostridium difficile RepID=T3G4Y2_CLODC
putative sodium:phosphate symporter
Na/Pi-cotransporter II-like protein {ECO:0000313|EMBL:EHJ31721.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_108_000G1_scaffold_442_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23992..25596)
DNA (1605bp) protein (535aa)
Glucose inhibited division A family protein n=2 Tax=Clostridium difficile RepID=T4PDZ6_CLODI
Glucose inhibited division A family protein {ECO:0000313|EMBL:EQG73725.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_108_000G1_scaffold_442_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25644..25961)
DNA (318bp) protein (106aa)
Uncharacterized protein n=183 Tax=Clostridium difficile RepID=C9XRN8_CLODC
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG77962.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS89467.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_108_000G1_scaffold_442_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25966..26331)
DNA (366bp) protein (122aa)
Uncharacterized protein n=208 Tax=Clostridium difficile RepID=T3G1R8_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG73780.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_108_000G1_scaffold_442_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26412..27461)
DNA (1050bp) protein (350aa)
Uncharacterized protein n=14 Tax=Clostridium difficile RepID=C9XRP0_CLODC
protein translocase
Uncharacterized protein {ECO:0000313|EMBL:EHJ31717.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_108_000G1_scaffold_442_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27702..28286)
DNA (585bp) protein (195aa)
Uncharacterized protein n=35 Tax=Clostridium difficile RepID=U3XMK3_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31567.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_108_000G1_scaffold_442_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28301..28744)
DNA (444bp) protein (148aa)
Uncharacterized protein n=98 Tax=Clostridium difficile RepID=Q180D6_CLOD6
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG77861.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS85105.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_108_000G1_scaffold_442_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28745..29617)
DNA (873bp) protein (291aa)
Uncharacterized protein n=56 Tax=Clostridium difficile RepID=C9XRP3_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE07016.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_108_000G1_scaffold_442_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29670..30029)
DNA (360bp) protein (120aa)
Putative type IV pilin n=58 Tax=Clostridium difficile RepID=C9XRP4_CLODC
type IV pilin
Putative type IV pilin {ECO:0000313|EMBL:CDS85101.1}; Putative type IV pilin PilA {ECO:0000313|EMBL:CEJ99947.1}; Type IV pilin {ECO:0000313|EMBL:CKG77798.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_108_000G1_scaffold_442_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30083..31168)
DNA (1086bp) protein (362aa)
Type II secretion system (T2SS), F family protein n=47 Tax=Clostridium difficile RepID=T2X1W9_CLODI
type IV pilus-assembly protein
Putative type II secretion system protein {ECO:0000313|EMBL:CCL23757.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_108_000G1_scaffold_442_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31339..32682)
DNA (1344bp) protein (448aa)
Type II/IV secretion system family protein n=76 Tax=Clostridium difficile RepID=T4G2K1_CLODI
putative pilus assembly ATPase
Putative pilus assembly ATPase {ECO:0000313|EMBL:CEJ99949.1}; Type IV pilus-assembly protein {ECO:0000313|EMBL:CKG77735.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Displaying items 1-30 of 69 in total

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