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L3_108_000G1_scaffold_532

Search features with annotation key words

Displaying items 1-30 of 66 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_532_1
unknown

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comp(269..424)
DNA (156bp) protein (52aa)

This feature has no annotations

L3_108_000G1_scaffold_532_2
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(887..1738)
DNA (852bp) protein (284aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXY5_9FIRM
L3_108_000G1_scaffold_532_3
Clostridium sp. CAG:413, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1761..2420)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NCN5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC09923.1}; TaxID=1262803 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:413.;"
metal dependent phosphohydrolase
L3_108_000G1_scaffold_532_4
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2537..3562
DNA (1026bp) protein (342aa)
UDP-glucose 4-epimerase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DSK9_9FIRM
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDA91493.1}; TaxID=1262961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:563.;"
UDP-galactose-4-epimerase
L3_108_000G1_scaffold_532_5
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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3766..5112
DNA (1347bp) protein (449aa)
MATE efflux family protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EE86_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEQ56939.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
putative efflux protein, MATE family
L3_108_000G1_scaffold_532_6
Porphyromonas crevioricanis, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5387..7339)
DNA (1953bp) protein (651aa)
NAD(P) transhydrogenase, beta subunit n=1 Tax=Porphyromonas gingivalis (strain TDC60) RepID=F5XDA1_PORGT
pntB; NAD(P) transhydrogenase subunit beta
NADP transhydrogenase subunit beta {ECO:0000313|EMBL:KGN91016.1}; TaxID=393921 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas crevioricanis.;"
L3_108_000G1_scaffold_532_7
Porphyromonas endodontalis, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(7332..7634)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Porphyromonas endodontalis ATCC 35406 RepID=C3JC86_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EEN82208.1}; TaxID=553175 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas endodontalis ATCC 35406.;"
putative NADPH-NAD transhydrogenase subunit alpha
L3_108_000G1_scaffold_532_8
Treponema denticola, Treponema, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

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comp(7705..8862)
DNA (1158bp) protein (386aa)
NAD(P)(+) transhydrogenase (AB-specific), alpha subunit n=7 Tax=Treponema denticola RepID=M2ACU4_TREDN
NADP oxidoreductase
NAD(P)(+) transhydrogenase (AB-specific), alpha subunit {ECO:0000313|EMBL:EMB20806.1}; TaxID=999434 species="Bacteria; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema.;" source="Treponema denticola OTK.;"
L3_108_000G1_scaffold_532_9
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8936..9391)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6HXR9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB41840.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
transcriptional regulator
L3_108_000G1_scaffold_532_10
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10322..10600)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GHN6_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO35194.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_108_000G1_scaffold_532_11
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10616..12334)
DNA (1719bp) protein (573aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NZC1_9FIRM
phosphoenolpyruvate-protein phosphotransferase
L3_108_000G1_scaffold_532_12
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12350..13021)
DNA (672bp) protein (224aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EMQ1_9FIRM
L3_108_000G1_scaffold_532_13
Firmicutes bacterium CAG:536, Firmicutes, Bacteria

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13357..14118
DNA (762bp) protein (254aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:536 RepID=R5ZCZ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA34484.1}; TaxID=1263028 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:536.;"
DeoR family transcriptional regulator
L3_108_000G1_scaffold_532_14
Enterococcus pallens, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(14266..15231)
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Enterococcus pallens ATCC BAA-351 RepID=R2QFS6_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EOH95367.1}; TaxID=1158607 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus pallens ATCC BAA-351.;"
tktC; transketolase
L3_108_000G1_scaffold_532_15
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15235..16083)
DNA (849bp) protein (283aa)
transketolase subunit A (EC:2.2.1.1)
Transketolase, thiamine diphosphate binding domain protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LTX6_9CLOT
Transketolase, thiamine diphosphate binding domain protein {ECO:0000313|EMBL:EFR37785.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_108_000G1_scaffold_532_16
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16124..17230)
DNA (1107bp) protein (369aa)
Sugar isomerase (SIS) n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R1L9_CLOSW
Sugar isomerase {ECO:0000313|EMBL:KEZ90495.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
sugar isomerase (SIS)
L3_108_000G1_scaffold_532_17
Eubacterium ventriosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17271..18329)
DNA (1059bp) protein (353aa)
SIS domain protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z897_9FIRM
SIS domain protein {ECO:0000313|EMBL:EDM50620.1}; TaxID=411463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ventriosum ATCC 27560.;"
glucosamine 6-phosphate synthetase
L3_108_000G1_scaffold_532_18
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18471..19103
DNA (633bp) protein (211aa)
Haloacid dehalogenase superfamily enzyme subfamily IA n=1 Tax=Clostridium sp. CAG:221 RepID=R6G0Q3_9CLOT
Haloacid dehalogenase superfamily enzyme subfamily IA {ECO:0000313|EMBL:CDB14931.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
HAD family hydrolase
L3_108_000G1_scaffold_532_19
Sneathia sp. Sn35, Sneathia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

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comp(19107..19568)
DNA (462bp) protein (154aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SMM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:AKC96025.1}; TaxID=1069640 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Sneathia.;" source="Sneathia sp. Sn35.;"
putative PTS IIA-like nitrogen-regulatory protein PtsN
L3_108_000G1_scaffold_532_20
Serratia sp. M24T3, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19990..20280
DNA (291bp) protein (97aa)
PTS system lactose/cellobiose-specific transporter subunit IIB n=1 Tax=Serratia sp. M24T3 RepID=I0QUE0_9ENTR
PTS system lactose/cellobiose-specific transporter subunit IIB {ECO:0000313|EMBL:EIC84913.1}; TaxID=932213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia sp. M24T3.;"
PTS sysytem, mannitol-specific enzyme II, B component
L3_108_000G1_scaffold_532_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20320..21645
DNA (1326bp) protein (442aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1BDH4_9FIRM
PTS system sugar-specific permease component family protein {ECO:0000313|EMBL:EQJ60095.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_108_000G1_scaffold_532_22
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21798..22877)
DNA (1080bp) protein (360aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Clostridium sp. CAG:352 RepID=R6R148_9CLOT
L3_108_000G1_scaffold_532_23
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

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comp(22925..23722)
DNA (798bp) protein (266aa)
SAM-dependent methyltransferase id=4061987 bin=GWF2_Clostridiales_36_10 species=Clostridium hathewayi genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
methyltransferase type 11
Tax=GWF2_Clostridiales_36_10_curated
L3_108_000G1_scaffold_532_24
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23724..25430)
DNA (1707bp) protein (569aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
leuA1; 2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Clostridium sp. CAG:217 RepID=R6J1M7_9CLOT
L3_108_000G1_scaffold_532_25
Clostridium sp. CAG:217, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26538..28952)
DNA (2415bp) protein (805aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1262779 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:217.;"
leuS; Leucine-tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Clostridium sp. CAG:217 RepID=R6J1U1_9CLOT
L3_108_000G1_scaffold_532_26
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29011..29364)
DNA (354bp) protein (118aa)
Ribosomal silencing factor RsfS n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y052_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
iojap family protein
L3_108_000G1_scaffold_532_27
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(29427..31046)
DNA (1620bp) protein (540aa)
Putative teichoic acid/polysaccharide glycosyl transferase n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7A636_9FIRM
dolichyl-phosphate-mannose-mannosyltransferase family protein
Dolichyl-phosphate-mannose-mannosyltransferase family protein {ECO:0000313|EMBL:AIY82539.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_000G1_scaffold_532_28
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(31018..32232)
DNA (1215bp) protein (405aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
Probable nicotinate-nucleotide adenylyltransferase n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A723_9CLOT
hypothetical protein
L3_108_000G1_scaffold_532_29
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32257..32658)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6I7W8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB42554.1}; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:177.;"
conserved hypothetical protein TIGR00253
L3_108_000G1_scaffold_532_30
Eubacterium sp. CAG:180, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(32655..33263)
DNA (609bp) protein (203aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1262882 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:180.;"
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=2 Tax=root RepID=R5N364_9FIRM
Displaying items 1-30 of 66 in total

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