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L3_108_000G1_scaffold_2712

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_2712_1
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(266..439)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:83 RepID=R5DD45_9FIRM
Uncharacterised protein {ECO:0000313|EMBL:CRH79179.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
hypothetical protein
L3_108_000G1_scaffold_2712_2
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(436..585)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:202 RepID=R6N7J3_9FIRM
Uncharacterised protein {ECO:0000313|EMBL:CRH79178.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
hypothetical protein
L3_108_000G1_scaffold_2712_3
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(700..807)
DNA (108bp) protein (36aa)
Uncharacterised protein {ECO:0000313|EMBL:CRH79178.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
L3_108_000G1_scaffold_2712_4
Peptostreptococcaceae bacterium oral taxon 113, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(965..1711)
DNA (747bp) protein (249aa)
Sigma-54 interaction domain protein n=1 Tax=Peptostreptococcaceae bacterium oral taxon 113 str. W5053 RepID=U2L5K2_9FIRM
Sigma-54 interaction domain protein {ECO:0000313|EMBL:ERJ84704.1}; TaxID=1321784 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium oral taxon 113 str. W5053.;"
PAS domain-containing protein
L3_108_000G1_scaffold_2712_5
Peptostreptococcaceae bacterium AS15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1885..2937)
DNA (1053bp) protein (351aa)
Bacterial type II secretion system domain protein F n=1 Tax=Eubacterium yurii subsp. margaretiae ATCC 43715 RepID=E0QKM6_9FIRM
Type II secretion system protein F {ECO:0000313|EMBL:EJP24572.1}; TaxID=936556 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium AS15.;"
tapC; type IV pilus assembly protein TapC
L3_108_000G1_scaffold_2712_6
Peptostreptococcaceae bacterium CM2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2912..4276)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Eubacteriaceae bacterium CM2 RepID=V9HS94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL18310.1}; TaxID=796939 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium CM2.;"
PilB-like pili biogenesis ATPase
L3_108_000G1_scaffold_2712_7
Anaerococcus tetradius, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4370..5122
DNA (753bp) protein (251aa)
Nitroreductase family protein n=1 Tax=Anaerococcus tetradius ATCC 35098 RepID=C2CFG2_9FIRM
Nitroreductase family protein {ECO:0000313|EMBL:EEI83781.1}; TaxID=525255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus tetradius ATCC 35098.;"
nitroreductase
L3_108_000G1_scaffold_2712_8
unknown

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5122..5424
DNA (303bp) protein (101aa)

This feature has no annotations

L3_108_000G1_scaffold_2712_9
Peptostreptococcaceae bacterium OBRC8, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5522..7165)
DNA (1644bp) protein (548aa)
Glutamine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00016670}; EC=6.1.1.18 {ECO:0000256|HAMAP-Rule:MF_00126, ECO:0000256|SAAS:SAAS00023088};; Glutaminyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00126}; TaxID=796941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium OBRC8.;"
glnS; glutamyl-tRNA synthetase (EC:6.1.1.18)
Glutamine--tRNA ligase n=1 Tax=Eubacteriaceae bacterium OBRC8 RepID=J6H5M6_9FIRM
L3_108_000G1_scaffold_2712_10
Peptostreptococcaceae bacterium AS15, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7203..8450)
DNA (1248bp) protein (416aa)
TIGR00299 family protein n=1 Tax=Eubacterium sp. AS15 RepID=J5GTT3_9FIRM
UPF0272 protein HMPREF1142_1055 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=936556 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium AS15.;"
hypothetical protein
L3_108_000G1_scaffold_2712_11
Peptostreptococcaceae bacterium CM2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8447..9136)
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Eubacteriaceae bacterium CM2 RepID=V9HNE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL15243.1}; TaxID=796939 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium CM2.;"
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
L3_108_000G1_scaffold_2712_12
Fusobacterium gonidiaformans, Fusobacterium, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(9277..10500)
DNA (1224bp) protein (408aa)
Amidohydrolase n=1 Tax=Fusobacterium gonidiaformans 3-1-5R RepID=E5BDQ7_9FUSO
Amidohydrolase {ECO:0000313|EMBL:EFS21183.1}; TaxID=469605 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Fusobacterium.;" source="Fusobacterium gonidiaformans 3-1-5R.;"
carboxypeptidase
L3_108_000G1_scaffold_2712_13
[Eubacterium] yurii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10598..11488)
DNA (891bp) protein (297aa)
TIGR00268 family protein n=1 Tax=Eubacterium yurii subsp. margaretiae ATCC 43715 RepID=E0QKW0_9FIRM
TIGR00268 family protein {ECO:0000313|EMBL:EFM38558.1}; TaxID=864565 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Eubacterium] yurii subsp. margaretiae ATCC 43715.;"
PP-loop domain-containing protein
L3_108_000G1_scaffold_2712_14
Peptoniphilus lacrimalis, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11626..11820)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VV16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFA89605.1}; TaxID=596330 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus lacrimalis 315-B.;"
hypothetical protein
L3_108_000G1_scaffold_2712_15
Peptostreptococcaceae bacterium OBRC8, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11957..13054)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=2 Tax=unclassified Eubacteriaceae RepID=J4W6J4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EJU21551.1}; TaxID=796941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium OBRC8.;"
hypothetical protein
L3_108_000G1_scaffold_2712_16
Peptostreptococcaceae bacterium ACC19a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13055..14161)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Eubacteriaceae bacterium ACC19a RepID=G9WZ64_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL16040.1}; TaxID=796937 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium ACC19a.;"
hypothetical protein
L3_108_000G1_scaffold_2712_17
Peptoniphilus indolicus, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14245..15612)
DNA (1368bp) protein (456aa)
HTH-type transcriptional regulatory protein GabR {ECO:0000313|EMBL:EGY80273.1}; EC=2.6.1.- {ECO:0000313|EMBL:EGY80273.1};; TaxID=997350 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus indolicus ATCC 29427.;"
HTH-type transcriptional regulatory protein GabR n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D2J6_9FIRM
DeoR family transcriptional regulator
L3_108_000G1_scaffold_2712_18
Peptoniphilus indolicus, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15716..16576
DNA (861bp) protein (287aa)
Pyridoxal biosynthesis lyase PdxS {ECO:0000313|EMBL:EGY80272.1}; EC=4.-.-.- {ECO:0000313|EMBL:EGY80272.1};; TaxID=997350 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus indolicus ATCC 29427.;"
Pyridoxal biosynthesis lyase PdxS n=1 Tax=Peptoniphilus indolicus ATCC 29427 RepID=G4D2J5_9FIRM
pyridoxal biosynthesis lyase PdxS
L3_108_000G1_scaffold_2712_19
Peptostreptococcaceae bacterium OBRC8, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16630..16911)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Eubacteriaceae bacterium OBRC8 RepID=J4W6I8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EJU21546.1}; TaxID=796941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium OBRC8.;"
hypothetical protein
L3_108_000G1_scaffold_2712_20
unknown

Not on your lists

comp(16975..17133)
DNA (159bp) protein (53aa)

This feature has no annotations

L3_108_000G1_scaffold_2712_21
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17291..17722)
DNA (432bp) protein (144aa)
Flavodoxin n=1 Tax=Clostridium sp. CAG:242 RepID=R6D032_9CLOT
Flavodoxin {ECO:0000313|EMBL:CDA77301.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
flavodoxin, short chain
L3_108_000G1_scaffold_2712_22
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(17753..18304)
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MJI8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB99823.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L3_108_000G1_scaffold_2712_23
Firmicutes bacterium CAG:41, Firmicutes, Bacteria

Not on your lists

comp(18334..18618)
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:41 RepID=R6MVE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB99824.1}; TaxID=1263021 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:41.;"
hypothetical protein
L3_108_000G1_scaffold_2712_24
Ruminococcus sp. CAG:488, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18829..19713)
DNA (885bp) protein (295aa)
Transcriptional regulator AraC family n=1 Tax=Ruminococcus sp. CAG:488 RepID=R5Y450_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDA19569.1}; TaxID=1262959 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:488.;"
AraC family transcriptional regulator
L3_108_000G1_scaffold_2712_25
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19908..20078)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NST1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN00908.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_108_000G1_scaffold_2712_26
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(20082..20537)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5A9W6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX39483.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
ferrous iron transporter FeoB
L3_108_000G1_scaffold_2712_27
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20583..21170)
DNA (588bp) protein (196aa)
Ferrous iron transport protein B n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0U7_9FIRM
Ferrous iron transport protein B {ECO:0000313|EMBL:EEA84522.1}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hiranonis DSM 13275.;"
feoB1; ferrous iron transport protein B
L3_108_000G1_scaffold_2712_28
Firmicutes bacterium CAG:114, Firmicutes, Bacteria

Not on your lists

21992..22276
DNA (285bp) protein (95aa)
Mn-dependent transcriptional regulator n=1 Tax=Firmicutes bacterium CAG:114 RepID=R5HBL6_9FIRM
Mn-dependent transcriptional regulator {ECO:0000313|EMBL:CCY27080.1}; TaxID=1263001 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:114.;"
Mn-dependent transcriptional regulator
Displaying 28 items

View Taxonomy