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L3_108_000G1_scaffold_2302

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_2302_1
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..724
DNA (723bp) protein (241aa)
rlmB; putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB (EC:2.1.1.-)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HTH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJS22793.1}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
L3_108_000G1_scaffold_2302_2
Paenibacillus sp. VKM B-2647, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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721..1236
DNA (516bp) protein (172aa)
Uncharacterized protein n=2 Tax=Paenibacillus RepID=F5LKK8_9BACL
RNA-binding protein {ECO:0000313|EMBL:KIL38396.1}; TaxID=1590651 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. VKM B-2647.;"
hypothetical protein
L3_108_000G1_scaffold_2302_3
Alloprevotella rava, Alloprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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1250..2467
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Alloprevotella rava F0323 RepID=G5GEC5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EHG20978.1}; TaxID=679199 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella.;" source="Alloprevotella rava F0323.;"
PAS domain S-box protein
L3_108_000G1_scaffold_2302_4
unknown

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comp(2525..2863)
DNA (339bp) protein (113aa)

This feature has no annotations

L3_108_000G1_scaffold_2302_5
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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2949..3401
DNA (453bp) protein (151aa)
Transcriptional regulator Rrf2 family n=1 Tax=Dorea longicatena CAG:42 RepID=R7FZJ3_9FIRM
Transcriptional regulator Rrf2 family {ECO:0000313|EMBL:CDE19122.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
putative transcriptional regulator
L3_108_000G1_scaffold_2302_6
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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3411..4688
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NQS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDN01421.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Hemolysins and related proteins containing CBS domains
L3_108_000G1_scaffold_2302_7
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4690..5076
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Eubacterium limosum (strain KIST612) RepID=E3GMU0_EUBLK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO37153.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_108_000G1_scaffold_2302_8
Thermus sp. NMX2.A1, Thermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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5078..5788
DNA (711bp) protein (237aa)
rluA; ribosomal small subunit pseudouridine synthase A (EC:5.4.99.-)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=570924 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus.;" source="Thermus sp. NMX2.A1.;"
Pseudouridine synthase n=1 Tax=Thermus scotoductus (strain ATCC 700910 / SA-01) RepID=E8PPQ5_THESS
L3_108_000G1_scaffold_2302_9
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5785..6369
DNA (585bp) protein (195aa)
Phosphoserine phosphatase n=1 Tax=Clostridium sp. CAG:1024 RepID=R5AHT0_9CLOT
Phosphoserine phosphatase {ECO:0000313|EMBL:CCX42870.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
putative phosphoserine phosphatase
L3_108_000G1_scaffold_2302_10
Peptostreptococcaceae bacterium oral taxon 113, Clostridiales, Clostridia, Firmicutes, Bacteria

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6366..7124
DNA (759bp) protein (253aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Peptostreptococcaceae bacterium oral taxon 113 str. W5053 RepID=U2J1U6_9FIRM
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:ERJ80206.1}; TaxID=1321784 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium oral taxon 113 str. W5053.;"
Short-chain dehydrogenases of various substrate specificities
L3_108_000G1_scaffold_2302_11
Johnsonella ignava, Johnsonella, Clostridiales, Clostridia, Firmicutes, Bacteria

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7513..8823
DNA (1311bp) protein (437aa)
gabT; 4-aminobutyrate aminotransferase (EC:2.6.1.-)
Putative uncharacterized protein n=1 Tax=Johnsonella ignava ATCC 51276 RepID=G5GHG4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHI55961.1}; TaxID=679200 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Johnsonella.;" source="Johnsonella ignava ATCC 51276.;"
L3_108_000G1_scaffold_2302_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8910..9986
DNA (1077bp) protein (359aa)
Uncharacterized protein n=17 Tax=Clostridium difficile RepID=G6B3G6_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQG73581.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_108_000G1_scaffold_2302_13
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10077..13283)
DNA (3207bp) protein (1069aa)
Carbamoyl-phosphate synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00086116}; EC=6.3.5.5 {ECO:0000256|SAAS:SAAS00086116};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Diaminopimelate epimerase n=1 Tax=Clostridium leptum DSM 753 RepID=A7VVM6_9CLOT
L3_108_000G1_scaffold_2302_14
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13286..14350)
DNA (1065bp) protein (355aa)
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
Carbamoyl-phosphate synthase small chain n=2 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VMY1_CLOSH
L3_108_000G1_scaffold_2302_15
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14427..15194)
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9JJB1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS34314.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
hypothetical protein
L3_108_000G1_scaffold_2302_16
unknown

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15326..15673
DNA (348bp) protein (116aa)

This feature has no annotations

L3_108_000G1_scaffold_2302_17
BJP_08E140C01_Clostridiales_46_19, Clostridiales, Clostridia, Firmicutes, Bacteria

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15698..16552
DNA (855bp) protein (285aa)
UPF0042 nucleotide-binding protein TherJR_2719 n=1 Tax=Thermincola potens (strain JR) RepID=D5XCA1_THEPJ
hypothetical protein
Tax=BJP_08E140C01_Clostridiales_46_19
L3_108_000G1_scaffold_2302_18
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16571..17923
DNA (1353bp) protein (451aa)
Putative gluconeogenesis factor n=1 Tax=Acetohalobium arabaticum (strain ATCC 49924 / DSM 5501 / Z-7288) RepID=D9QU74_ACEAZ
Putative gluconeogenesis factor {ECO:0000256|HAMAP-Rule:MF_00973}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
hypothetical protein
L3_108_000G1_scaffold_2302_19
Clostridiaceae bacterium BRH_c20a, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17920..18870
DNA (951bp) protein (317aa)
Putative sporulation transcription regulator WhiA {ECO:0000256|HAMAP-Rule:MF_01420, ECO:0000256|SAAS:SAAS00005305}; TaxID=1629719 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae.;" source="Clostridiaceae bacterium BRH_c20a.;"
Sporulation transcription regulator id=2231004 bin=GWB2_Clostridiales_37_7 species=Clostridium acidurici genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
sporulation transcriptional regulator whiA
L3_108_000G1_scaffold_2302_20
Moorella thermoacetica, Moorella, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

18943..20142
DNA (1200bp) protein (400aa)
phosphoglycerate kinase (EC:2.7.2.3)
Phosphoglycerate kinase {ECO:0000255|HAMAP-Rule:MF_00145}; EC=2.7.2.3 {ECO:0000255|HAMAP-Rule:MF_00145};; TaxID=264732 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Moorella group; Moorella.;" source="Moorella thermoacetica (strain ATCC 39073).;"
Phosphoglycerate kinase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=PGK_MOOTA
L3_108_000G1_scaffold_2302_21
unknown

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20139..20255
DNA (117bp) protein (39aa)

This feature has no annotations

Displaying 21 items

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