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L3_108_000G1_scaffold_482

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_000G1_scaffold_482_1
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..531
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TSW8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG52778.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
S-layer protein
L3_108_000G1_scaffold_482_2
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(648..1988)
DNA (1341bp) protein (447aa)
MATE efflux family protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2AKD1_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:ERI66294.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
Na+-driven multidrug efflux pump
L3_108_000G1_scaffold_482_3
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2102..2740
DNA (639bp) protein (213aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CAL8_9CLOT
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:ERI66292.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
cyclic nucleotide-binding protein
L3_108_000G1_scaffold_482_4
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2707..3636)
DNA (930bp) protein (310aa)
Glycosyl hydrolase, family 43 n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CG29_9CLOT
Glycosyl hydrolase, family 43 {ECO:0000313|EMBL:ERI66291.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
beta-xylosidase
L3_108_000G1_scaffold_482_5
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3813..4565)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5C9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43031.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
putative polyferredoxin
L3_108_000G1_scaffold_482_6
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4701..5048)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5D0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43032.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
transcriptional regulator
L3_108_000G1_scaffold_482_7
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5059..5832)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5D1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43033.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_108_000G1_scaffold_482_8
Streptococcus uberis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(6071..6814)
DNA (744bp) protein (248aa)
hypothetical protein n=1 Tax=Lactobacillus farciminis RepID=UPI0002197A33
Uncharacterized protein {ECO:0000313|EMBL:KHD46098.1}; TaxID=1349 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus uberis.;"
hypothetical protein
L3_108_000G1_scaffold_482_9
Firmicutes bacterium CAG:94, Firmicutes, Bacteria

Not on your lists

comp(6829..7641)
DNA (813bp) protein (271aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6ZK48_9FIRM
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:CDD30832.1}; TaxID=1262989 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:94.;"
iolE; myo-inositol catabolism protein
L3_108_000G1_scaffold_482_10
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7657..8496)
DNA (840bp) protein (280aa)
ABC transporter, permease protein n=2 Tax=Clostridium RepID=D3ACB7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY90114.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
arabinose transporter permease
L3_108_000G1_scaffold_482_11
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8497..9417)
DNA (921bp) protein (307aa)
L-arabinose transport system permease protein AraP n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EM85_9FIRM
L-arabinose transport system permease protein AraP {ECO:0000313|EMBL:EEQ59053.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
arabinose transporter permease
L3_108_000G1_scaffold_482_12
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9430..10794)
DNA (1365bp) protein (455aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMV6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE97127.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
L-arabinose transport system sugar-binding protein
L3_108_000G1_scaffold_482_13
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10956..12566)
DNA (1611bp) protein (537aa)
Two component transcriptional regulator, AraC family n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1THI8_9CLOT
Two component transcriptional regulator, AraC family {ECO:0000313|EMBL:EGD46191.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
two component transcriptional regulator, AraC family
L3_108_000G1_scaffold_482_14
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12544..14460)
DNA (1917bp) protein (639aa)
Histidine kinase internal region n=1 Tax=Pelosinus fermentans JBW45 RepID=I9DIN8_9FIRM
integral membrane sensor signal transduction histidine kinase
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:CDZ24223.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_108_000G1_scaffold_482_15
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14687..16819
DNA (2133bp) protein (711aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A6P5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX36687.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
hypothetical protein
L3_108_000G1_scaffold_482_16
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17012..17803
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5D3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43035.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_108_000G1_scaffold_482_17
BJP_IG2157_Clostridiales_52_13, Dethiosulfatibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17864..18706)
DNA (843bp) protein (281aa)
UPI0003D65815 related cluster n=1 Tax=unknown RepID=UPI0003D65815
hypothetical protein
Tax=BJP_IG2157_Clostridiales_52_13
L3_108_000G1_scaffold_482_18
unknown

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comp(18721..19689)
DNA (969bp) protein (323aa)

This feature has no annotations

L3_108_000G1_scaffold_482_19
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19908..20369)
DNA (462bp) protein (154aa)
UPF0178 protein HMPREF0994_01063 n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5D4_9FIRM
UPF0178 protein HMPREF0994_01063 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_108_000G1_scaffold_482_20
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20376..20813)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5D5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43037.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_108_000G1_scaffold_482_21
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20888..22036)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5D6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43038.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Predicted oxidoreductases of the aldo/keto reductase family
L3_108_000G1_scaffold_482_22
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22200..23279)
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=S2LKB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPC05398.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_108_000G1_scaffold_482_23
unknown

Not on your lists

23538..23849
DNA (312bp) protein (104aa)

This feature has no annotations

L3_108_000G1_scaffold_482_24
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23896..24702
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5E5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43047.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
transcriptional regulator
L3_108_000G1_scaffold_482_25
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24753..25805)
DNA (1053bp) protein (351aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5E6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43048.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_108_000G1_scaffold_482_26
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26102..26968
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5E7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN43049.2}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
AraC family transcriptional regulator
L3_108_000G1_scaffold_482_27
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27020..28054)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KD69_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN38769.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_108_000G1_scaffold_482_28
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28103..29014)
DNA (912bp) protein (304aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KD70_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN38770.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
ABC transporter permease
L3_108_000G1_scaffold_482_29
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29032..29937)
DNA (906bp) protein (302aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KD71_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN38771.2}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
binding-protein-dependent transport system inner membrane protein
L3_108_000G1_scaffold_482_30
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29994..31694)
DNA (1701bp) protein (567aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KD72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN38772.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
ABC transporter substrate-binding protein
Displaying items 1-30 of 62 in total

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