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L3_108_039G1_scaffold_0

Search features with annotation key words

Displaying items 1-30 of 1005 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_039G1_scaffold_0_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..465)
DNA (465bp) protein (155aa)
NlpC/P60 family protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RJM2_CLOPF
entD; mannosyl-glycoendo-beta-N-acetylglucosamidase domain protein, possible enterotoxin
Mannosyl-glycoendo-beta-N-acetylglucosamidase domain protein, possible enterotoxin {ECO:0000313|EMBL:AIY84350.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(668..1822)
DNA (1155bp) protein (385aa)
Cell division protein FtsZ n=1 Tax=Clostridium colicanis 209318 RepID=N9WF93_9CLOT
ftsZ; cell division protein FtsZ
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1836..3119)
DNA (1284bp) protein (428aa)
Cell division protein FtsA n=1 Tax=Clostridium colicanis 209318 RepID=N9WFT0_9CLOT
cell division FtsA family protein
Cell division FtsA family protein {ECO:0000313|EMBL:AIY84552.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3324..4379)
DNA (1056bp) protein (352aa)
Twitching motility protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HGP7_9CLOT
twitching motility family protein
Twitching motility family protein {ECO:0000313|EMBL:AIY83199.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4477..5178)
DNA (702bp) protein (234aa)
RNA polymerase sigma factor n=4 Tax=Clostridium butyricum RepID=B1QYS7_CLOBU
sigK; RNA polymerase sigma-K factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5332..6921)
DNA (1590bp) protein (530aa)
Penicillin-binding protein 2 n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UXY9_CLOBO
penicillin binding transpeptidase domain protein
Penicillin binding transpeptidase domain protein {ECO:0000313|EMBL:AIY85062.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7120..7737)
DNA (618bp) protein (206aa)
udk; uridine kinase (EC:2.7.1.48)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Uridine kinase n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F912_9CLOT
L3_108_039G1_scaffold_0_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7750..8994)
DNA (1245bp) protein (415aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WF23_9CLOT
peptidase U32 family protein
Peptidase U32 family protein {ECO:0000313|EMBL:AIY84071.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8998..9642)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WFI6_9CLOT
spermine/spermidine synthase family protein
Spermine/spermidine synthase family protein {ECO:0000313|EMBL:AIY84696.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9659..10672)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=7 Tax=Clostridium perfringens RepID=B1BJ85_CLOPF
yceG-like family protein
YceG-like family protein {ECO:0000313|EMBL:AIY82675.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10773..12599)
DNA (1827bp) protein (609aa)
GTP-binding protein TypA/BipA n=1 Tax=Clostridium colicanis 209318 RepID=N9XPK7_9CLOT
typA; GTP-binding protein TypA/BipA
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:AIY82580.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12775..14442)
DNA (1668bp) protein (556aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1D0_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83708.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14513..14974)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WF18_9CLOT
Fur family transcriptional regulator {ECO:0000313|EMBL:KJU70654.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
ferric uptake regulator family protein
L3_108_039G1_scaffold_0_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14997..15257)
DNA (261bp) protein (87aa)
UPF0473 protein CLL_A1177 n=2 Tax=Clostridium botulinum B RepID=Y1177_CLOBB
hypothetical protein
UPF0473 protein UC77_14035 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_039G1_scaffold_0_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15332..15751)
DNA (420bp) protein (140aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Putative Holliday junction resolvase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y0H7_9CLOT
hypothetical protein
L3_108_039G1_scaffold_0_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15799..16056)
DNA (258bp) protein (86aa)
UPF0297 protein Cbei_1105 n=3 Tax=Clostridium RepID=Y1105_CLOB8
hypothetical protein
UPF0297 protein UC77_14025 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_039G1_scaffold_0_17
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(16216..18861)
DNA (2646bp) protein (882aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
alaS; alanine--tRNA ligase (EC:6.1.1.7)
Alanine--tRNA ligase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1C3_9CLOT
L3_108_039G1_scaffold_0_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19140..20174)
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WF12_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84997.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20165..20653)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MP73_CLOSA
PRC-barrel domain protein
PRC-barrel domain protein {ECO:0000313|EMBL:AIY83985.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20791..21870)
DNA (1080bp) protein (360aa)
trmU; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Clostridium colicanis 209318 RepID=N9Y0G9_9CLOT
L3_108_039G1_scaffold_0_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21880..22314)
DNA (435bp) protein (145aa)
FeS cluster assembly scaffold protein NifU n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H439_9CLOT
nifU; FeS cluster assembly scaffold protein NifU
FeS cluster assembly scaffold protein NifU {ECO:0000313|EMBL:AIY83040.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22317..23498)
DNA (1182bp) protein (394aa)
nifS; cysteine desulfurase NifS (EC:2.8.1.7)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Cysteine desulfurase n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1B4_9CLOT
L3_108_039G1_scaffold_0_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23501..23953)
DNA (453bp) protein (151aa)
Putative Rrf2 family protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6EJX7_9CLOT
cymR; HTH-type transcriptional regulator CymR
Transcriptional regulator {ECO:0000313|EMBL:KJU70644.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_039G1_scaffold_0_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24064..25332)
DNA (1269bp) protein (423aa)
ATPase, AAA family n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QIS0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJU70643.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
sigma-54 interaction domain protein
L3_108_039G1_scaffold_0_25
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25428..26027)
DNA (600bp) protein (200aa)
lacA; isomerase/acetyltransferase (EC:2.3.1.18)
Isomerase/acetyltransferase {ECO:0000313|EMBL:AIY82309.1}; EC=2.3.1.18 {ECO:0000313|EMBL:AIY82309.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
maltose O-acetyltransferase n=1 Tax=Clostridium arbusti RepID=UPI0002897832
L3_108_039G1_scaffold_0_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26182..26457)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XPI8_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY82644.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_0_27
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26585..26911
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0NC90_9CLOT
thioredoxin family protein
Uncharacterized protein {ECO:0000313|EMBL:KJU70641.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_039G1_scaffold_0_28
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27147..27704
DNA (558bp) protein (186aa)
Uncharacterized protein n=1 Tax=Clostridium sordellii VPI 9048 RepID=T0DTC1_CLOSO
Uncharacterised protein {ECO:0000313|EMBL:CEN24356.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
hypothetical protein
L3_108_039G1_scaffold_0_29
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27869..28279)
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1Q8H7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KJU70640.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
hypothetical protein
L3_108_039G1_scaffold_0_30
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28437..28850)
DNA (414bp) protein (138aa)
Putative HutP superfamily n=1 Tax=Clostridium chauvoei JF4335 RepID=S6F8Z7_9CLOT
hutP family protein
HutP family protein {ECO:0000313|EMBL:AIY84574.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Displaying items 1-30 of 1005 in total

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