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L3_108_039G1_scaffold_2

Search features with annotation key words

Displaying items 1-30 of 683 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_039G1_scaffold_2_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..1576
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XPU4_9CLOT
Mannosyl-glycoendo-beta-N-acetylglucosamidase domain protein, possible enterotoxin {ECO:0000313|EMBL:AIY84350.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
entD; mannosyl-glycoendo-beta-N-acetylglucosamidase domain protein, possible enterotoxin
L3_108_039G1_scaffold_2_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1814..2617
DNA (804bp) protein (268aa)
Sporulation sigma-E factor-processing peptidase {ECO:0000256|PIRNR:PIRNR018571}; EC=3.4.23.- {ECO:0000256|PIRNR:PIRNR018571};; Membrane-associated aspartic protease {ECO:0000256|PIRNR:PIRNR018571}; Stage II sporulation protein GA {ECO:0000256|PIRNR:PIRNR018571}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Sigma-E processing peptidase SpoIIGA n=1 Tax=Clostridium colicanis 209318 RepID=N9Y0R3_9CLOT
sporulation factor SpoIIGA family protein
L3_108_039G1_scaffold_2_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2628..3335
DNA (708bp) protein (236aa)
RNA polymerase sigma factor n=2 Tax=Clostridium RepID=A6LSH2_CLOB8
sigE; RNA polymerase sigma-E factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_039G1_scaffold_2_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3416..4189
DNA (774bp) protein (258aa)
RNA polymerase sigma factor n=1 Tax=Clostridium colicanis 209318 RepID=N9WF97_9CLOT
sigG; RNA polymerase sigma-G factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4256..4534
DNA (279bp) protein (93aa)
YlmC/YmxH family sporulation protein n=1 Tax=Clostridium colicanis 209318 RepID=N9Y1N2_9CLOT
sporulation , YlmC/YmxH family protein
Sporulation, YlmC/YmxH family protein {ECO:0000313|EMBL:AIY82660.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4614..5063
DNA (450bp) protein (150aa)
Transcriptional repressor NrdR n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CDM0_9CLOT
nrdR; transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4982..6211)
DNA (1230bp) protein (410aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=N9Z2I1_CLOBU
phage integrase family protein
Phage integrase family protein {ECO:0000313|EMBL:AIY82390.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6282..6749)
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TSL4_CLOP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84307.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6781..7251)
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CP88_CLOPF
helix-turn-helix family protein
Helix-turn-helix family protein {ECO:0000313|EMBL:AIY84081.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_10
Paenibacillus sp. E194, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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7409..7624
DNA (216bp) protein (72aa)
Uncharacterized protein n=13 Tax=Clostridium difficile RepID=U3W7P6_CLODI
Uncharacterized protein {ECO:0000313|EMBL:KJB88608.1}; TaxID=1458845 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. E194.;"
hypothetical protein
L3_108_039G1_scaffold_2_11
unknown

Not on your lists

7675..7806
DNA (132bp) protein (44aa)

This feature has no annotations

L3_108_039G1_scaffold_2_12
Clostridium saccharoperbutylacetonicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7803..8012)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MWG2_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGF55797.1}; TaxID=931276 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharoperbutylacetonicum N1-4(HMT).;"
L3_108_039G1_scaffold_2_13
Clostridium sp. IBUN125C, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8111..8773
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0A5R4_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ83927.1}; TaxID=1523154 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN125C.;"
phage related anti-repressor protein
L3_108_039G1_scaffold_2_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8882..9217
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Clostridium butyricum 60E.3 RepID=R0ACL2_CLOBU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY82947.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_15
unknown

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9266..9451
DNA (186bp) protein (62aa)

This feature has no annotations

L3_108_039G1_scaffold_2_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9465..9602
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Clostridium phage vB_CpeS-CP51 RepID=M9Q1J2_9CAUD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83757.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_17
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9631..9912
DNA (282bp) protein (94aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84236.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9927..10103
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens F262 RepID=H7CW79_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84150.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10115..10768
DNA (654bp) protein (218aa)
Peptidyl-prolyl cis-trans isomerase family protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BLX2_CLOPF
ERF superfamily protein
ERF superfamily protein {ECO:0000313|EMBL:AIY84910.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10781..11683
DNA (903bp) protein (301aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1RC84_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY84167.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11699..12571
DNA (873bp) protein (291aa)
DnaD and phage-associated domain protein n=9 Tax=Staphylococcus epidermidis RepID=E6JKR1_STAEP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY83364.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12571..12915
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Clostridium sp. JC122 RepID=UPI000287D844
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY82963.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13034..13513
DNA (480bp) protein (160aa)
Holliday junction resolvase RecU {ECO:0000256|SAAS:SAAS00056687}; EC=3.1.-.- {ECO:0000256|SAAS:SAAS00275393};; EC=3.1.22.- {ECO:0000256|SAAS:SAAS00056689};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Putative uncharacterized protein n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CPA3_CLOPF
recombination U family protein
L3_108_039G1_scaffold_2_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13601..13921
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1REX3_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT27559.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_108_039G1_scaffold_2_25
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14051..14284
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Clostridium intestinale URNW RepID=U2NM03_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERK30178.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium intestinale URNW.;"
L3_108_039G1_scaffold_2_26
Clostridium kluyveri, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14518..14802
DNA (285bp) protein (95aa)
Uncharacterized protein n=2 Tax=Clostridium kluyveri RepID=A5N182_CLOK5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDK34878.1}; TaxID=431943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680).;"
L3_108_039G1_scaffold_2_27
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15056..15532
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens F262 RepID=H7CW70_CLOPF
putative sigma factor
Putative sigma factor {ECO:0000313|EMBL:AIY83391.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_2_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15634..16296
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Clostridium perfringens CPE str. F4969 RepID=B1RG86_CLOPF
Uncharacterized protein {ECO:0000313|EMBL:EDT26959.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_108_039G1_scaffold_2_29
Halanaerobium hydrogeniformans, Halanaerobium, Halanaerobiales, Clostridia, Firmicutes, Bacteria

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16426..17232
DNA (807bp) protein (269aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Halanaerobium hydrogeniformans RepID=E4RKY6_HALHG
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:ADQ15727.1}; TaxID=656519 species="Bacteria; Firmicutes; Clostridia; Halanaerobiales; Halanaerobiaceae; Halanaerobium.;" source="Halanaerobium hydrogeniformans (Halanaerobium sp. (strain; sapolanicus)).;"
L3_108_039G1_scaffold_2_30
Clostridium tyrobutyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17250..18035
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Clostridium tyrobutyricum RepID=UPI00037D427C
Uncharacterized protein {ECO:0000313|EMBL:CDL91493.1}; TaxID=1408889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tyrobutyricum DIVETGP.;"
Displaying items 1-30 of 683 in total

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