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L3_108_039G1_scaffold_11

Search features with annotation key words

Displaying items 1-30 of 175 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_039G1_scaffold_11_1
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(481..1860)
DNA (1380bp) protein (460aa)
murD; UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Clostridium colicanis 209318 RepID=N9XWN0_9CLOT
L3_108_039G1_scaffold_11_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2299..3699)
DNA (1401bp) protein (467aa)
glyS; glycine--tRNA ligase (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Glycine--tRNA ligase n=1 Tax=Clostridium colicanis 209318 RepID=N9WBT3_9CLOT
L3_108_039G1_scaffold_11_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4067..4555
DNA (489bp) protein (163aa)
tubby C 2 family protein
Tubby C 2 family protein {ECO:0000313|EMBL:AIY82840.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_11_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5051..5950)
DNA (900bp) protein (300aa)
Abortive infection protein (Fragment) n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ11_9CLOT
CAAX protease self-immunity family protein
CAAX protease self-immunity family protein {ECO:0000313|EMBL:AIY83132.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_11_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6055..7560)
DNA (1506bp) protein (502aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
lysS; lysine--tRNA ligase (EC:6.1.1.6)
Lysine--tRNA ligase n=2 Tax=Clostridium botulinum B RepID=B2TIC7_CLOBB
L3_108_039G1_scaffold_11_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7575..8057)
DNA (483bp) protein (161aa)
Transcription elongation factor GreA n=1 Tax=Clostridium colicanis 209318 RepID=N9WBT8_9CLOT
greA; transcription elongation factor GreA domain protein
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_11_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8329..9297)
DNA (969bp) protein (323aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium colicanis 209318 RepID=N9WBE9_9CLOT
TIM-barrel , nifR3 family protein
L3_108_039G1_scaffold_11_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9326..10105)
DNA (780bp) protein (260aa)
coaX; type III pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274, ECO:0000313|EMBL:AIY84106.1}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274, ECO:0000313|EMBL:AIY84106.1};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Type III pantothenate kinase n=1 Tax=Clostridium colicanis 209318 RepID=N9XXK5_9CLOT
L3_108_039G1_scaffold_11_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10231..11901)
DNA (1671bp) protein (557aa)
Formate--tetrahydrofolate ligase {ECO:0000256|HAMAP-Rule:MF_01543}; EC=6.3.4.3 {ECO:0000256|HAMAP-Rule:MF_01543};; Formyltetrahydrofolate synthetase {ECO:0000256|HAMAP-Rule:MF_01543}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Formate--tetrahydrofolate ligase n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QBB2_9CLOT
formate--tetrahydrofolate ligase family protein
L3_108_039G1_scaffold_11_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12243..14045)
DNA (1803bp) protein (601aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium colicanis 209318 RepID=N9XWP1_9CLOT
hflB; ATP-dependent metallopeptidase HflB family protein
L3_108_039G1_scaffold_11_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14130..14669)
DNA (540bp) protein (180aa)
hpt; hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:AIY85158.1}; EC=2.4.2.8 {ECO:0000313|EMBL:AIY85158.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Hypoxanthine phosphoribosyltransferase n=2 Tax=Clostridium botulinum E RepID=B2UXU3_CLOBA
L3_108_039G1_scaffold_11_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14671..16071)
DNA (1401bp) protein (467aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
tRNA(Ile)-lysidine synthase n=1 Tax=Clostridium colicanis 209318 RepID=N9WBF3_9CLOT
tilS; tRNA(Ile)-lysidine synthetase
L3_108_039G1_scaffold_11_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16192..18573)
DNA (2382bp) protein (794aa)
spoIIE; stage II sporulation protein E (EC:3.1.3.16)
Stage II sporulation protein E {ECO:0000313|EMBL:AIY83357.1}; EC=3.1.3.16 {ECO:0000313|EMBL:AIY83357.1};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Stage II sporulation protein E n=1 Tax=Clostridium colicanis 209318 RepID=N9XXK9_9CLOT
L3_108_039G1_scaffold_11_14
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19908..20315)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XKX6_9CLOT
S1 RNA binding domain protein
Uncharacterized protein {ECO:0000313|EMBL:KJU71985.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_039G1_scaffold_11_15
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20374..20664)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XWP7_9CLOT
septum formation initiator family protein
Septum formation initiator family protein {ECO:0000313|EMBL:AIY84161.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_11_16
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20748..21137)
DNA (390bp) protein (130aa)
Spore cortex biosynthesis protein YabQ n=1 Tax=Clostridium colicanis 209318 RepID=N9WBU7_9CLOT
yabQ; spore cortex biosynthesis protein YabQ
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:AIY82353.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_11_17
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21536..21793)
DNA (258bp) protein (86aa)
RNA-binding S4 protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XXL3_9CLOT
S4 domain protein
RNA-binding protein S4 {ECO:0000313|EMBL:KJU71981.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_039G1_scaffold_11_18
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21862..22137)
DNA (276bp) protein (92aa)
DNA-binding protein HU n=5 Tax=Clostridium RepID=U5MP25_CLOSA
hup; DNA-binding protein HU
DNA-binding protein {ECO:0000313|EMBL:KJU71980.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_039G1_scaffold_11_19
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22366..23799)
DNA (1434bp) protein (478aa)
Putative MazG family protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6ENS9_9CLOT
MazG family protein
MazG family protein {ECO:0000313|EMBL:AIY83420.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_11_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23824..25359)
DNA (1536bp) protein (512aa)
Stage V sporulation protein B n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MKQ2_CLOSA
polysaccharide biosynthesis family protein
Polysaccharide biosynthesis family protein {ECO:0000313|EMBL:AIY84160.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_11_21
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25450..26001)
DNA (552bp) protein (184aa)
Stage V sporulation protein T n=2 Tax=Clostridium botulinum E RepID=B2UXT2_CLOBA
spoVT; stage V sporulation protein T
Stage V sporulation protein T {ECO:0000313|EMBL:AIY82768.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_11_22
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26147..27169)
DNA (1023bp) protein (341aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XXL7_9CLOT
PPIC-type PPIASE domain protein
L3_108_039G1_scaffold_11_23
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27258..30752)
DNA (3495bp) protein (1165aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Transcription-repair-coupling factor n=1 Tax=Clostridium colicanis 209318 RepID=N9XKY5_9CLOT
mfd; transcription-repair coupling factor
L3_108_039G1_scaffold_11_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30785..31360)
DNA (576bp) protein (192aa)
pth; peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Peptidyl-tRNA hydrolase n=1 Tax=Clostridium colicanis 209318 RepID=N9XWQ7_9CLOT
L3_108_039G1_scaffold_11_25
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31504..32589)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WBV7_9CLOT
PDZ domain protein
PDZ domain protein {ECO:0000313|EMBL:AIY84876.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_11_26
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32604..34022)
DNA (1419bp) protein (473aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9WBG6_9CLOT
HAMP domain protein
L3_108_039G1_scaffold_11_27
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34023..34709)
DNA (687bp) protein (229aa)
Two-component system response regulator n=1 Tax=Clostridium colicanis 209318 RepID=N9XXM1_9CLOT
response regulator
Transcriptional regulator {ECO:0000313|EMBL:KJU71971.1}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_039G1_scaffold_11_28
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34917..35876)
DNA (960bp) protein (320aa)
prs; ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:AIY82642.1}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:AIY82642.1};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
Ribose-phosphate pyrophosphokinase n=1 Tax=Clostridium colicanis 209318 RepID=N9WBH3_9CLOT
L3_108_039G1_scaffold_11_29
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35932..37302)
DNA (1371bp) protein (457aa)
glmU; UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase (EC:2.7.7.23)
Bifunctional protein GlmU n=1 Tax=Clostridium colicanis 209318 RepID=N9XXN1_9CLOT
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_039G1_scaffold_11_30
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37510..37785)
DNA (276bp) protein (92aa)
Putative septation protein SpoVG n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CC95_9CLOT
putative septation protein spoVG
Putative septation protein SpoVG {ECO:0000256|HAMAP-Rule:MF_00819}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Displaying items 1-30 of 175 in total

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