ggKbase home page

L3_108_039G1_scaffold_21

Search features with annotation key words

Displaying items 1-30 of 156 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_039G1_scaffold_21_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..520
DNA (519bp) protein (173aa)
purE; phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
N5-carboxyaminoimidazole ribonucleotide mutase n=195 Tax=Escherichia RepID=Q1RF12_ECOUT
L3_108_039G1_scaffold_21_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

517..1584
DNA (1068bp) protein (356aa)
purK; phosphoribosylaminoimidazole carboxylase ATPase subunit (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; Short=N5-CAIR synthase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; EC=6.3.4.18 {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200};; 5-(carboxyamino)imidazole ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_01928, ECO:0000256|RuleBase:RU361200}; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
Phosphoribosylaminoimidazole carboxylase ATPase subunit n=77 Tax=Escherichia RepID=A1A8I7_ECOK1
L3_108_039G1_scaffold_21_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1737..2630)
DNA (894bp) protein (298aa)
arcC; carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=80 Tax=Escherichia RepID=A1A8I6_ECOK1
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
L3_108_039G1_scaffold_21_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2627..3442)
DNA (816bp) protein (272aa)
Uncharacterized protein n=122 Tax=Enterobacteriaceae RepID=Q1RF15_ECOUT
ylbF; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDN80911.1}; YlbF protein; TaxID=1359206 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ST131.;"
L3_108_039G1_scaffold_21_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3453..4712)
DNA (1260bp) protein (420aa)
Uncharacterized protein n=79 Tax=Escherichia RepID=B7ME41_ECO45
ylbE; hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE06048.1}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
L3_108_039G1_scaffold_21_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4722..6389)
DNA (1668bp) protein (556aa)
Membrane protein FdrA n=13 Tax=Escherichia RepID=C1HGE3_9ESCH
Protein fdrA {ECO:0000313|EMBL:EQX32916.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
bacterial FdrA protein
L3_108_039G1_scaffold_21_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6706..7755
DNA (1050bp) protein (350aa)
Ureidoglycolate dehydrogenase {ECO:0000313|EMBL:EHU31722.1}; EC=1.1.1.154 {ECO:0000313|EMBL:EHU31722.1};; TaxID=868137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1E.;"
Ureidoglycolate dehydrogenase n=372 Tax=Escherichia RepID=E2QHA7_ECOLX
ureidoglycolate dehydrogenase
L3_108_039G1_scaffold_21_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7777..9003
DNA (1227bp) protein (409aa)
ylbB; allantoate amidohydrolase (EC:3.5.3.-)
Allantoate amidohydrolase {ECO:0000313|EMBL:ABE06045.1}; EC=3.5.3.- {ECO:0000313|EMBL:ABE06045.1};; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
Allantoate amidohydrolase n=121 Tax=Escherichia RepID=Q1RF19_ECOUT
L3_108_039G1_scaffold_21_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9023..9808
DNA (786bp) protein (262aa)
Uncharacterized protein n=87 Tax=Escherichia RepID=B7ME37_ECO45
cupin domain-containing protein
Ureidoglycine aminohydrolase {ECO:0000313|EMBL:EQP59386.1}; TaxID=1281011 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 70 (4-2963531).;"
L3_108_039G1_scaffold_21_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9937..11082)
DNA (1146bp) protein (382aa)
Glycerate kinase 1 n=78 Tax=Escherichia RepID=Q1RF21_ECOUT
glycerate kinase
Glycerate kinase 1 {ECO:0000313|EMBL:EQX32912.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L3_108_039G1_scaffold_21_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11104..12405)
DNA (1302bp) protein (434aa)
Purine permease ybbY n=306 Tax=Escherichia RepID=E2QHA3_ECOLX
ybbY; purine permease YbbY
Predicted uracil/xanthine transporter {ECO:0000313|EMBL:CAS07994.1}; TaxID=574521 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O127:H6 (strain E2348/69 / EPEC).;"
L3_108_039G1_scaffold_21_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12461..13822)
DNA (1362bp) protein (454aa)
Allantoinase {ECO:0000256|HAMAP-Rule:MF_01645}; EC=3.5.2.5 {ECO:0000256|HAMAP-Rule:MF_01645};; Allantoin-utilizing enzyme {ECO:0000256|HAMAP-Rule:MF_01645}; TaxID=431946 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O150:H5 (strain SE15).;"
Allantoinase n=332 Tax=Escherichia RepID=ALLB_ECO27
ybbX; allantoinase
L3_108_039G1_scaffold_21_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13882..15336)
DNA (1455bp) protein (485aa)
NCS1 nucleoside transporter family protein n=20 Tax=Escherichia RepID=C1HGH1_9ESCH
allantoin permease
NCS1 nucleoside transporter family protein {ECO:0000313|EMBL:EFR18774.1}; TaxID=670897 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2362-75.;"
L3_108_039G1_scaffold_21_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15506..16384)
DNA (879bp) protein (293aa)
glxR; tartronate semialdehyde reductase, NADH-dependent (EC:1.1.1.60)
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:CDL44107.1}; EC=1.1.1.60 {ECO:0000313|EMBL:CDL44107.1};; TaxID=1432559 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli ISC41.;"
2-hydroxy-3-oxopropionate reductase n=175 Tax=Escherichia RepID=E2QHA0_ECOLX
L3_108_039G1_scaffold_21_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16484..17260)
DNA (777bp) protein (259aa)
gip; Hydroxypyruvate isomerase (EC:5.3.1.22)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=431946 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O150:H5 (strain SE15).;"
Hydroxypyruvate isomerase n=299 Tax=Escherichia RepID=A1A8H4_ECOK1
L3_108_039G1_scaffold_21_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17273..19054)
DNA (1782bp) protein (594aa)
gcl; glyoxylate carboligase (EC:4.1.1.47)
Glyoxylate carboligase n=94 Tax=Enterobacteriaceae RepID=A1A8H3_ECOK1
Glyoxylate carboligase {ECO:0000313|EMBL:EQX32906.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L3_108_039G1_scaffold_21_17
Escherichia coli CAG:4, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19144..19959)
DNA (816bp) protein (272aa)
HTH-type transcriptional repressor AllR n=91 Tax=Escherichia RepID=ALLR_ECOK1
ybbU; DNA-binding transcriptional repressor AllR
DNA-binding transcriptional repressor AllR {ECO:0000313|EMBL:CDC77698.1}; TaxID=1263075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia; environmental samples.;" source="Escherichia coli CAG:4.;"
L3_108_039G1_scaffold_21_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20037..20519)
DNA (483bp) protein (161aa)
allA; Ureidoglycolate hydrolase (EC:3.5.3.19)
Ureidoglycolate lyase {ECO:0000256|HAMAP-Rule:MF_00616, ECO:0000256|SAAS:SAAS00181913}; EC=4.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00616, ECO:0000256|SAAS:SAAS00181913};; Ureidoglycolatase {ECO:0000256|HAMAP-Rule:MF_00616}; TaxID=868142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2E.;"
Ureidoglycolate lyase n=281 Tax=Escherichia RepID=ALLA_ECO27
L3_108_039G1_scaffold_21_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20749..21675
DNA (927bp) protein (309aa)
HTH-type transcriptional activator AllS n=84 Tax=Escherichia RepID=ALLS_ECOK1
ybbS; DNA-binding transcriptional activator AllS
HTH-type transcriptional activator AllS; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
L3_108_039G1_scaffold_21_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21744..22838
DNA (1095bp) protein (365aa)
tRNA 2-selenouridine synthase {ECO:0000255|HAMAP-Rule:MF_01622}; EC=2.9.1.- {ECO:0000255|HAMAP-Rule:MF_01622};; Selenophosphate-dependent tRNA 2-selenouridine synthase {ECO:0000255|HAMAP-Rule:MF_01622}; TaxID=405955 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O1:K1 / APEC.;"
tRNA 2-selenouridine synthase n=74 Tax=Escherichia RepID=SELU_ECO45
ybbB; tRNA 2-selenouridine synthase
L3_108_039G1_scaffold_21_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22897..25311)
DNA (2415bp) protein (805aa)
Efflux ABC transporter, permease protein n=21 Tax=Escherichia RepID=C1HGH2_9ESCH
efflux ABC transporter permease
Uncharacterized protein {ECO:0000313|EMBL:ABE06032.1}; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
L3_108_039G1_scaffold_21_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25308..25994)
DNA (687bp) protein (229aa)
ABC transporter, ATP-binding protein n=79 Tax=Escherichia RepID=D5CW51_ECOKI
ABC transporter ATP-binding protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EQX32900.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L3_108_039G1_scaffold_21_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25995..26588
DNA (594bp) protein (198aa)
lysophospholipase (EC:3.1.1.5)
Lysophospholipase n=534 Tax=Escherichia RepID=B1IZA0_ECOLC
Multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 {ECO:0000313|EMBL:EID66435.1}; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
L3_108_039G1_scaffold_21_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26617..27387
DNA (771bp) protein (257aa)
Oxidoreductase, short chain dehydrogenase/reductase family n=74 Tax=Escherichia RepID=D5CW49_ECOKI
short chain dehydrogenase/reductase family oxidoreductase
Putative oxidoreductase with NAD(P)-binding Rossmann-fold domain {ECO:0000313|EMBL:CAR01844.1}; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
L3_108_039G1_scaffold_21_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27448..28302
DNA (855bp) protein (285aa)
Protein YbbN n=979 Tax=Enterobacteriaceae RepID=A7ZIQ2_ECO24
ybbN; protein YbbN
Thioredoxin {ECO:0000313|EMBL:ELI33574.1}; TaxID=1169376 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE112.;"
L3_108_039G1_scaffold_21_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28365..29144)
DNA (780bp) protein (260aa)
Putative metal resistance protein n=1 Tax=Escherichia coli M605 RepID=F4SUW3_ECOLX
hypothetical protein
ABC transporter permease {ECO:0000313|EMBL:ELE04654.1}; TaxID=1182658 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE51.;"
L3_108_039G1_scaffold_21_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29131..29808)
DNA (678bp) protein (226aa)
Predicted transporter subunit: ATP-binding component of ABC superfamily n=179 Tax=Enterobacteriaceae RepID=B7UKH3_ECO27
ybbL; ABC transporter ATP-binding protein
ATP-binding component of ABC superfamily {ECO:0000313|EMBL:EHU14044.1}; TaxID=868133 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC1A.;"
L3_108_039G1_scaffold_21_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29954..30871
DNA (918bp) protein (306aa)
Uncharacterized protein ybbK n=224 Tax=Escherichia RepID=E2QH86_ECOLX
putative protease, membrane anchored
Protein QmcA {ECO:0000313|EMBL:EOX01637.1}; TaxID=1181728 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE182.;"
L3_108_039G1_scaffold_21_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30868..31326
DNA (459bp) protein (153aa)
Uncharacterized protein n=168 Tax=Escherichia RepID=D2NE11_ECOS5
membrane protein
Inner membrane protein ybbJ {ECO:0000313|EMBL:ETY49903.1}; TaxID=1328434 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli BWH 40.;"
L3_108_039G1_scaffold_21_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31429..31791)
DNA (363bp) protein (121aa)
Uncharacterized protein n=179 Tax=Escherichia RepID=B1LJQ0_ECOSM
hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKH84452.1}; Uncharacterized protein {ECO:0000313|EMBL:AIX62212.1}; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
Displaying items 1-30 of 156 in total

View Taxonomy