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L3_108_054G1_scaffold_9

Search features with annotation key words

Displaying items 1-30 of 256 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_054G1_scaffold_9_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..693)
DNA (693bp) protein (231aa)
Probable transposase n=1 Tax=Clostridium perfringens (strain 13 / Type A) RepID=Q8XNC8_CLOPE
transposase
Probable transposase {ECO:0000313|EMBL:BAB80116.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_108_054G1_scaffold_9_2
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1132..2007)
DNA (876bp) protein (292aa)
RpiR family transcriptional regulator n=10 Tax=Clostridium perfringens RepID=H7CVE2_CLOPF
RpiR family transcriptional regulator
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EDS81329.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
L3_108_054G1_scaffold_9_3
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2039..2590)
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Clostridium perfringens RepID=B1RC41_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT22201.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_108_054G1_scaffold_9_4
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2596..3306)
DNA (711bp) protein (237aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Pseudouridine synthase n=2 Tax=Clostridium perfringens RepID=B1RJS2_CLOPF
rluB; ribosomal small subunit pseudouridine synthase B
L3_108_054G1_scaffold_9_5
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3523..4341
DNA (819bp) protein (273aa)
AP endonuclease n=1 Tax=Clostridium perfringens F262 RepID=H7CVD9_CLOPF
AP endonuclease {ECO:0000313|EMBL:EIA17257.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
AP endonuclease
L3_108_054G1_scaffold_9_6
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4713..5150
DNA (438bp) protein (146aa)
PadR family transcriptional regulator n=7 Tax=Clostridium perfringens RepID=H7CVD7_CLOPF
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EDT25508.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_108_054G1_scaffold_9_7
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5250..6065)
DNA (816bp) protein (272aa)
accA; acetyl-CoA carboxylase carboxyltransferase subunit alpha (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823}; Short=ACCase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00823};; EC=6.4.1.2 {ECO:0000255|HAMAP-Rule:MF_00823};; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha n=3 Tax=Clostridium perfringens RepID=ACCA_CLOP1
L3_108_054G1_scaffold_9_8
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6058..6936)
DNA (879bp) protein (293aa)
accD; acetyl-CoA carboxylase, carboxyl transferase subunit beta (EC:6.4.1.2)
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395}; Short=ACCase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; Short=Acetyl-CoA carboxylase carboxyltransferase subunit beta {ECO:0000256|HAMAP-Rule:MF_01395};; EC=6.4.1.2 {ECO:0000256|HAMAP-Rule:MF_01395};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta n=6 Tax=Clostridium perfringens RepID=ACCD_CLOP1
L3_108_054G1_scaffold_9_9
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6929..8281)
DNA (1353bp) protein (451aa)
Acetyl-CoA carboxylase, biotin carboxylase {ECO:0000313|EMBL:EDT71013.1}; EC=6.4.1.2 {ECO:0000313|EMBL:EDT71013.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
accC; biotin carboxylase (EC:6.4.1.2)
Acetyl-CoA carboxylase, biotin carboxylase n=3 Tax=Clostridium perfringens RepID=B1RRF7_CLOPF
L3_108_054G1_scaffold_9_10
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8293..8712)
DNA (420bp) protein (140aa)
fabZ; (3R)-hydroxymyristoyl-ACP dehydratase (EC:4.2.1.-)
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064869}; EC=4.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00406, ECO:0000256|SAAS:SAAS00064862};; (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; Beta-hydroxyacyl-ACP dehydratase {ECO:0000256|HAMAP-Rule:MF_00406}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ n=10 Tax=Clostridium perfringens RepID=FABZ_CLOP1
L3_108_054G1_scaffold_9_11
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8715..9206)
DNA (492bp) protein (164aa)
Acetyl-CoA carboxylase, biotin carboxyl carrier protein n=6 Tax=Clostridium perfringens RepID=H7CVD2_CLOPF
accB; acetyl-CoA carboxylase, biotin carboxyl carrier protein
Acetyl-CoA carboxylase, biotin carboxyl carrier protein {ECO:0000313|EMBL:EIA17250.1}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_108_054G1_scaffold_9_12
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9218..10459)
DNA (1242bp) protein (414aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
fabF; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 2 n=1 Tax=Clostridium perfringens E str. JGS1987 RepID=B1BY38_CLOPF
L3_108_054G1_scaffold_9_13
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10474..11214)
DNA (741bp) protein (247aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:EDT71029.1}; EC=1.1.1.100 {ECO:0000313|EMBL:EDT71029.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
fabG; 3-ketoacyl-ACP reductase (EC:1.1.1.100)
3-oxoacyl-(Acyl-carrier-protein) reductase n=2 Tax=Clostridium perfringens RepID=B1RRG1_CLOPF
L3_108_054G1_scaffold_9_14
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11218..12162)
DNA (945bp) protein (315aa)
fabD; malonyl CoA-acyl carrier protein transacylase (EC:2.3.1.39)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
Malonyl CoA-acyl carrier protein transacylase n=2 Tax=Clostridium perfringens RepID=Q0TRG9_CLOP1
L3_108_054G1_scaffold_9_15
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12259..13233)
DNA (975bp) protein (325aa)
fabH; 3-oxoacyl-ACP synthase (EC:2.3.1.41)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000255|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000255|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000255|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000255|HAMAP-Rule:MF_01815}; Short=KAS III {ECO:0000255|HAMAP-Rule:MF_01815};; TaxID=195103 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 /; NCIMB 6125 / NCTC 8237 / Type A).;"
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=FABH_CLOP1
L3_108_054G1_scaffold_9_16
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13235..13699)
DNA (465bp) protein (155aa)
Transcriptional regulator, MarR family n=2 Tax=Clostridium perfringens RepID=Q0TRH1_CLOP1
MarR family transcriptional regulator
Transcriptional regulator, MarR family {ECO:0000313|EMBL:EDT25510.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_108_054G1_scaffold_9_17
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13871..14371)
DNA (501bp) protein (167aa)
Cytidine/deoxycytidylate deaminase family protein n=2 Tax=Clostridium perfringens RepID=Q0TRH2_CLOP1
cytidine/deoxycytidylate deaminase
Cytidine/deoxycytidylate deaminase family protein {ECO:0000313|EMBL:EDT25509.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_108_054G1_scaffold_9_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14452..15258)
DNA (807bp) protein (269aa)
Electron transport complex, rnfabcdge type, B subunit n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CQD5_CLOPF
rnfB; ferredoxin
Electron transport complex, RnfABCDGE type, B subunit {ECO:0000313|EMBL:EDT25503.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_108_054G1_scaffold_9_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15275..15850)
DNA (576bp) protein (192aa)
Electron transport complex, RnfABCDGE type, A subunit n=7 Tax=Clostridium perfringens RepID=H7CVC4_CLOPF
rnfA; RnfABCDGE type electron transport complex subunit A
Electron transport complex subunit A {ECO:0000256|HAMAP-Rule:MF_00459}; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
L3_108_054G1_scaffold_9_20
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15881..16549)
DNA (669bp) protein (223aa)
Electron transport complex, rnfabcdge type, E subunit n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CQD3_CLOPF
rnfE; electron transport complex protein RsxE
Electron transport complex subunit E {ECO:0000256|HAMAP-Rule:MF_00478}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
L3_108_054G1_scaffold_9_21
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16567..17601)
DNA (1035bp) protein (345aa)
Electron transport complex, rnfabcdge type, G subunit n=1 Tax=Clostridium perfringens WAL-14572 RepID=H1CQD2_CLOPF
Electron transport complex subunit G {ECO:0000256|HAMAP-Rule:MF_00479}; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
rnfG; RnfABCDGE type electron transport complex subunit G
L3_108_054G1_scaffold_9_22
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17832..18884)
DNA (1053bp) protein (351aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|SAAS:SAAS00021659};; TaxID=883064 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens F262.;"
Alanine racemase n=3 Tax=Clostridium perfringens RepID=H7CVC1_CLOPF
L3_108_054G1_scaffold_9_23
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19064..20014)
DNA (951bp) protein (317aa)
SPFH domain-containing protein/band 7 family protein n=9 Tax=Clostridium perfringens RepID=H7CVC0_CLOPF
SPFH domain-containing protein/band 7 family protein
SPFH domain protein/band 7 family protein {ECO:0000313|EMBL:EDT23399.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
L3_108_054G1_scaffold_9_24
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20034..20447)
DNA (414bp) protein (138aa)
Uncharacterized protein n=3 Tax=Clostridium perfringens RepID=H7CVB9_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB80765.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_108_054G1_scaffold_9_25
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20763..22670
DNA (1908bp) protein (636aa)
Glutamine-dependent NAD(+) synthetase {ECO:0000313|EMBL:EDT13386.1}; EC=6.3.1.5 {ECO:0000313|EMBL:EDT13386.1};; TaxID=451755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens E str. JGS1987.;"
nadE; NAD synthetase (EC:6.3.1.5)
Glutamine-dependent NAD(+) synthetase n=1 Tax=Clostridium perfringens D str. JGS1721 RepID=B1V596_CLOPF
L3_108_054G1_scaffold_9_26
unknown

Not on your lists

comp(22795..22902)
DNA (108bp) protein (36aa)

This feature has no annotations

L3_108_054G1_scaffold_9_27
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23030..24475
DNA (1446bp) protein (482aa)
Tetratricopeptide repeat protein n=1 Tax=Clostridium perfringens C str. JGS1495 RepID=B1BF40_CLOPF
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDS81554.1}; TaxID=445334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens C str. JGS1495.;"
hypothetical protein
L3_108_054G1_scaffold_9_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24603..25427)
DNA (825bp) protein (275aa)
hisK; histidinol-phosphatase (EC:3.1.3.15)
Histidinol-phosphatase {ECO:0000313|EMBL:EDT71011.1}; EC=3.1.3.15 {ECO:0000313|EMBL:EDT71011.1};; TaxID=488537 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens D str. JGS1721.;"
Histidinol-phosphatase n=1 Tax=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) RepID=Q0TRI2_CLOP1
L3_108_054G1_scaffold_9_29
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25611..26399)
DNA (789bp) protein (263aa)
Endonuclease/exonuclease/phosphatase family protein n=1 Tax=Clostridium perfringens B str. ATCC 3626 RepID=B1R8S5_CLOPF
Endonuclease/exonuclease/phosphatase family protein {ECO:0000313|EMBL:EDT23350.1}; TaxID=451754 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens B str. ATCC 3626.;"
hypothetical protein
L3_108_054G1_scaffold_9_30
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26590..26829)
DNA (240bp) protein (80aa)
Uncharacterized protein n=10 Tax=Clostridium perfringens RepID=H7CVB4_CLOPF
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDT25964.1}; TaxID=451756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens CPE str. F4969.;"
Displaying items 1-30 of 256 in total

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