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L3_108_054G1_scaffold_34

Search features with annotation key words

Displaying items 1-30 of 151 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_054G1_scaffold_34_1
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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837..2246
DNA (1410bp) protein (470aa)
Lysine decarboxylase n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z186_EUBE2
lysine decarboxylase
Lysine decarboxylase {ECO:0000313|EMBL:ACR71060.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_108_054G1_scaffold_34_2
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2237..2824
DNA (588bp) protein (196aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=C4Z187_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA40733.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
L3_108_054G1_scaffold_34_3
unknown

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comp(2854..3162)
DNA (309bp) protein (103aa)

This feature has no annotations

L3_108_054G1_scaffold_34_4
unknown

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comp(3243..3413)
DNA (171bp) protein (57aa)

This feature has no annotations

L3_108_054G1_scaffold_34_5
RBG_16_Chloroflexi_50_9_curated, Chloroflexi, Bacteria

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3619..4539
DNA (921bp) protein (307aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LM98_9FIRM
cooC; carbon monoxide dehydrogenase accessory protein
Tax=RBG_16_Chloroflexi_50_9_curated
L3_108_054G1_scaffold_34_6
BJP_IG2102_Clostridiales_34_350, Clostridiales, Clostridia, Firmicutes, Bacteria

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4608..5234
DNA (627bp) protein (209aa)
Iron(III) ABC transporter, ATP-binding protein n=1 Tax=Methanosarcina barkeri (strain Fusaro / DSM 804) RepID=Q46AA5_METBF
Iron(III) ABC transporter, ATP-binding protein
Tax=BJP_IG2102_Clostridiales_34_350
L3_108_054G1_scaffold_34_7
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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5337..5843
DNA (507bp) protein (169aa)
Fe2+/Zn2+ uptake regulation proteins n=1 Tax=Clostridium sp. CAG:81 RepID=R5G5Y6_9CLOT
Fur family transcriptional regulator {ECO:0000313|EMBL:KGG81466.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
Fur family ferric uptake regulator
L3_108_054G1_scaffold_34_8
Bacteroides pectinophilus CAG:437, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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5986..6294
DNA (309bp) protein (103aa)
50S ribosomal protein L21 n=2 Tax=Bacteria RepID=B7ANU5_9FIRM
50S ribosomal protein L21 {ECO:0000256|HAMAP-Rule:MF_01363, ECO:0000256|RuleBase:RU000562}; TaxID=1263051 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides pectinophilus CAG:437.;"
rplU; 50S ribosomal protein L21
L3_108_054G1_scaffold_34_9
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6348..6638
DNA (291bp) protein (97aa)
50S ribosomal protein L27 n=2 Tax=environmental samples RepID=R6JT08_9FIRM
50S ribosomal protein L27 {ECO:0000256|HAMAP-Rule:MF_00539}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
50S ribosomal protein L27
L3_108_054G1_scaffold_34_10
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6753..9386
DNA (2634bp) protein (878aa)
Copper-exporting ATPase n=1 Tax=Roseburia sp. CAG:45 RepID=R6NXQ6_9FIRM
Copper-exporting ATPase {ECO:0000313|EMBL:CDC11016.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
copper-translocating P-type ATPase
L3_108_054G1_scaffold_34_11
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9483..10670
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HCY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE37191.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
hypothetical protein
L3_108_054G1_scaffold_34_12
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10727..11512)
DNA (786bp) protein (262aa)
Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) (EC:1.1.1.100)
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) n=1 Tax=Clostridium sp. CAG:122 RepID=R5S1K8_9CLOT
Dehydrogenases with different specificities (Related to short-chain alcohol dehydrogenases) {ECO:0000313|EMBL:CCZ40856.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
L3_108_054G1_scaffold_34_13
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12072..12617
DNA (546bp) protein (182aa)
Putative sigma-54 modulation protein n=1 Tax=Eubacterium sp. CAG:86 RepID=R5E6H6_9FIRM
Putative sigma-54 modulation protein {ECO:0000313|EMBL:CCX83746.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
sigma-54 modulation protein
L3_108_054G1_scaffold_34_14
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12842..15412
DNA (2571bp) protein (857aa)
Protein translocase subunit SecA n=1 Tax=Eubacterium sp. CAG:86 RepID=R5DXU3_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
preprotein translocase subunit SecA
L3_108_054G1_scaffold_34_15
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15432..16565
DNA (1134bp) protein (378aa)
Peptide chain release factor 2 n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HCS8_9FIRM
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
peptide chain release factor RF-2
L3_108_054G1_scaffold_34_16
unknown

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16581..17171
DNA (591bp) protein (197aa)

This feature has no annotations

L3_108_054G1_scaffold_34_17
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17195..17980
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z6G7_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR73559.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_108_054G1_scaffold_34_18
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17980..19287
DNA (1308bp) protein (436aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:252 RepID=R6KCW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB67896.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
hypothetical protein
L3_108_054G1_scaffold_34_19
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19306..19593
DNA (288bp) protein (96aa)
The TrpR like protein from Eubacterium eligens ATCC 27750 n=1 Tax=Eubacterium sp. CAG:86 RepID=R5DPW6_9FIRM
The TrpR like protein from Eubacterium eligens ATCC 27750 {ECO:0000313|EMBL:CCX82233.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
TrpR-related protein YerC/YecD
L3_108_054G1_scaffold_34_20
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19661..20305)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HDJ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE37480.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
hypothetical protein
L3_108_054G1_scaffold_34_21
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20477..22870
DNA (2394bp) protein (798aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HGX5_9FIRM
hypothetical protein
L3_108_054G1_scaffold_34_22
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22983..23177
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HDR6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE37476.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
hypothetical protein
L3_108_054G1_scaffold_34_23
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23219..24829)
DNA (1611bp) protein (537aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
CTP synthase n=1 Tax=Eubacterium sp. CAG:252 RepID=R6KC43_9FIRM
pyrG; CTP synthetase
L3_108_054G1_scaffold_34_24
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25047..26969
DNA (1923bp) protein (641aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Eubacterium sp. CAG:252 RepID=R6K0Y5_9FIRM
L3_108_054G1_scaffold_34_25
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27000..30479
DNA (3480bp) protein (1160aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
DNA polymerase III subunit alpha n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NAZ7_9FIRM
L3_108_054G1_scaffold_34_26
Clostridium sp. CAG:1024, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30549..31424)
DNA (876bp) protein (292aa)
EDD domain protein DegV family n=1 Tax=Clostridium sp. CAG:1024 RepID=R5ALT9_9CLOT
EDD domain protein DegV family {ECO:0000313|EMBL:CCX41752.1}; TaxID=1262770 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1024.;"
DegV family protein
L3_108_054G1_scaffold_34_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31667..33070
DNA (1404bp) protein (468aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3V8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78091.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_108_054G1_scaffold_34_28
Butyrivibrio sp. CAG:318, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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33057..33944
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Butyrivibrio sp. CAG:318 RepID=R6QKH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC37093.1}; TaxID=1262761 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio; environmental samples.;" source="Butyrivibrio sp. CAG:318.;"
hypothetical protein
L3_108_054G1_scaffold_34_29
unknown

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33883..34008
DNA (126bp) protein (42aa)

This feature has no annotations

L3_108_054G1_scaffold_34_30
Ruminococcus obeum CAG:39, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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34541..34900
DNA (360bp) protein (120aa)
LrgA family protein n=2 Tax=Clostridiales RepID=R7D5I9_9FIRM
LrgA family protein {ECO:0000313|EMBL:CDD85884.1}; TaxID=1263107 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus obeum CAG:39.;"
Putative effector of murein hydrolase LrgA
Displaying items 1-30 of 151 in total

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