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L3_108_054G1_scaffold_48

Search features with annotation key words

Displaying items 1-30 of 255 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_054G1_scaffold_48_1
Clostridium sp. IBUN22A, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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304..1179
DNA (876bp) protein (292aa)
Cation efflux family protein n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IGK0_CLOBU
Uncharacterized protein {ECO:0000313|EMBL:KJZ87062.1}; TaxID=1523155 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. IBUN22A.;"
cation efflux protein
L3_108_054G1_scaffold_48_2
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1179..1664
DNA (486bp) protein (162aa)
ErfK/YbiS/YcfS/YnhG family protein n=1 Tax=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) RepID=A6LTM2_CLOB8
ErfK/YbiS/YcfS/YnhG family protein
ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:AJG98344.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
L3_108_054G1_scaffold_48_3
unknown

Not on your lists

comp(1712..2113)
DNA (402bp) protein (134aa)

This feature has no annotations

L3_108_054G1_scaffold_48_4
Clostridium celatum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2197..2595
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QK18_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EKY28303.1}; TaxID=545697 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium celatum DSM 1785.;"
hypothetical protein
L3_108_054G1_scaffold_48_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2675..3628)
DNA (954bp) protein (318aa)
K+-dependent Na+/Ca+ exchanger protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UYP8_CLOBO
K+-dependent Na+/Ca+ exchanger protein {ECO:0000313|EMBL:EES50437.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
putative K+-dependent Na+/Ca+ exchanger-like protein
L3_108_054G1_scaffold_48_6
unknown

Not on your lists

comp(3672..4169)
DNA (498bp) protein (166aa)

This feature has no annotations

L3_108_054G1_scaffold_48_7
unknown

Not on your lists

comp(4274..5131)
DNA (858bp) protein (286aa)

This feature has no annotations

L3_108_054G1_scaffold_48_8
Clostridium chauvoei, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5394..5666)
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FAF0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDG02018.1}; TaxID=1351755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium chauvoei JF4335.;"
hypothetical protein
L3_108_054G1_scaffold_48_9
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5749..7128)
DNA (1380bp) protein (460aa)
Radical SAM domain-containing protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MM21_CLOSA
radical SAM domain-containing protein
Radical SAM domain-containing protein {ECO:0000313|EMBL:AGX41568.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_108_054G1_scaffold_48_10
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7328..8521)
DNA (1194bp) protein (398aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
LL-diaminopimelate aminotransferase (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAG2_9CLOT
L3_108_054G1_scaffold_48_11
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8505..10121)
DNA (1617bp) protein (539aa)
CTP synthase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
CTP synthase n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UGF0_RUMA7
L3_108_054G1_scaffold_48_12
Ruminococcus sp. CAG:624, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10114..10953)
DNA (840bp) protein (280aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262965 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:624.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Ruminococcus sp. CAG:624 RepID=R7MN77_9FIRM
L3_108_054G1_scaffold_48_13
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10959..11528)
DNA (570bp) protein (190aa)
UPI0003D68577 related cluster n=1 Tax=unknown RepID=UPI0003D68577
ANTAR domain protein {ECO:0000313|EMBL:CDA11246.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
ANTAR domain-containing protein
L3_108_054G1_scaffold_48_14
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11557..12879)
DNA (1323bp) protein (441aa)
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase, type I n=7 Tax=Clostridium thermocellum RepID=A3DBW4_CLOTH
Glutamine synthetase type I {ECO:0000313|EMBL:GAE87020.1}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
L3_108_054G1_scaffold_48_15
[Clostridium] straminisolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13117..14124
DNA (1008bp) protein (336aa)
Aspartate--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088413}; EC=6.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00555, ECO:0000256|SAAS:SAAS00088403};; Asparagine synthetase A {ECO:0000256|HAMAP-Rule:MF_00555}; TaxID=1294263 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] straminisolvens JCM 21531.;"
asnA2; aspartate--ammonia ligase AsnA (EC:6.3.1.1)
Aspartate--ammonia ligase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAH1_9CLOT
L3_108_054G1_scaffold_48_16
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14138..16234
DNA (2097bp) protein (699aa)
Glutamate--ammonia ligase, catalytic domain protein {ECO:0000313|EMBL:EEG31517.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EEG31517.1};; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
Glutamate--ammonia ligase, catalytic domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EAH2_9CLOT
glutamine synthetase
L3_108_054G1_scaffold_48_17
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16275..17183)
DNA (909bp) protein (303aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
rnz; ribonuclease Z (EC:3.1.26.11)
Ribonuclease Z n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UYR3_CLOBO
L3_108_054G1_scaffold_48_18
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17235..18047)
DNA (813bp) protein (271aa)
Putative membrane protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5USR9_CLOBO
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EES50959.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
L3_108_054G1_scaffold_48_19
Vibrio anguillarum, Vibrio, Vibrionales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18242..18451)
DNA (210bp) protein (70aa)
Uncharacterized protein n=2 Tax=Listonella anguillarum serovar O1 RepID=F7YQL1_VIBA7
putative uncharacterized protein
Uncharacterized protein {ECO:0000313|EMBL:AEH34198.1}; TaxID=882102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.;" source="Vibrio anguillarum (strain ATCC 68554 / 775) (Listonella anguillarum).;"
L3_108_054G1_scaffold_48_20
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18935..19963
DNA (1029bp) protein (343aa)
Chitinase n=1 Tax=Paenibacillus dendritiformis C454 RepID=H3SHT6_9BACL
glycosyl hydrolases 18 family protein
Glycosyl hydrolases 18 family protein {ECO:0000313|EMBL:AIY82874.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_054G1_scaffold_48_21
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20194..21075)
DNA (882bp) protein (294aa)
Transporter n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UXY0_CLOBA
Membrane protein {ECO:0000313|EMBL:KIL07830.1}; TaxID=1491 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum.;"
transporter
L3_108_054G1_scaffold_48_22
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21199..23313)
DNA (2115bp) protein (705aa)
cellulose synthase n=1 Tax=Clostridium botulinum RepID=UPI0002EC61F3
Bacterial cellulose synthase subunit {ECO:0000313|EMBL:AIY80025.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
cell wall anchored protein
L3_108_054G1_scaffold_48_23
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23331..24584)
DNA (1254bp) protein (418aa)
N-acetylglucosaminyltransferase n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2V310_CLOBA
Glycosyl transferase 2 family protein {ECO:0000313|EMBL:AIY80655.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
N-acetylglucosaminyltransferase
L3_108_054G1_scaffold_48_24
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24599..25849)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Clostridium colicanis 209318 RepID=N9XXY1_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY82350.1}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_054G1_scaffold_48_25
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25881..26729)
DNA (849bp) protein (283aa)
Putative signaling protein n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CGD4_9CLOT
Putative signaling protein {ECO:0000313|EMBL:EOR26276.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
putative signaling protein
L3_108_054G1_scaffold_48_26
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26732..28198)
DNA (1467bp) protein (489aa)
Uncharacterized protein n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MUG6_CLOSA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX43082.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_108_054G1_scaffold_48_27
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28238..29377)
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8FYU1_CLOPA
Uncharacterised protein {ECO:0000313|EMBL:CEN69165.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
L3_108_054G1_scaffold_48_28
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29498..30460)
DNA (963bp) protein (321aa)
Membrane spanning protein n=2 Tax=Clostridium botulinum B RepID=B2TKD6_CLOBB
membrane spanning protein
Membrane spanning protein {ECO:0000313|EMBL:ACD24336.1}; Putative membrane protein {ECO:0000313|EMBL:CDH90489.1}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
L3_108_054G1_scaffold_48_29
Clostridium sp. CAG:221, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30473..30739)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:221 RepID=R6G582_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB16669.1}; TaxID=1262780 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:221.;"
hypothetical protein
L3_108_054G1_scaffold_48_30
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30743..30973)
DNA (231bp) protein (77aa)
Conserved domain protein n=2 Tax=Clostridium botulinum E RepID=B2V2E5_CLOBA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AIY81690.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
Displaying items 1-30 of 255 in total

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