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L3_108_054G1_scaffold_76

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_054G1_scaffold_76_1
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(37..225)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RJF4_9CLOT
Uncharacterised protein {ECO:0000313|EMBL:CRH74391.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
Tar; methyl-accepting chemotaxis protein
L3_108_054G1_scaffold_76_2
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(713..904)
DNA (192bp) protein (64aa)
Terminase small subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=G2EVL9_9LACO
Terminase small subunit {ECO:0000313|EMBL:CRH74390.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
phage terminase small subunit
L3_108_054G1_scaffold_76_3
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

1276..1653
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AWN2_SYNWW
Uncharacterised protein family (UPF0150) {ECO:0000313|EMBL:CRH76138.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
hypothetical protein
L3_108_054G1_scaffold_76_4
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(1691..1963)
DNA (273bp) protein (91aa)
Uncharacterised protein {ECO:0000313|EMBL:CRH76137.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
L3_108_054G1_scaffold_76_5
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(1991..2839)
DNA (849bp) protein (283aa)
5%2C10-methylenetetrahydrofolate reductase {ECO:0000313|EMBL:CRH76136.1}; EC=1.5.1.20 {ECO:0000313|EMBL:CRH76136.1};; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
Methylenetetrahydrofolate reductase n=1 Tax=Veillonella sp. oral taxon 780 str. F0422 RepID=F9N3F8_9FIRM
metF; 5,10-methylenetetrahydrofolate reductase
L3_108_054G1_scaffold_76_6
Streptococcus anginosus, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2842..5091)
DNA (2250bp) protein (750aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=706437 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus anginosus group.;" source="Streptococcus anginosus F0211.;"
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Streptococcus massiliensis RepID=UPI00034D177D
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
L3_108_054G1_scaffold_76_7
Catenibacterium mitsuokai, Catenibacterium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(5308..6651)
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=E2NW10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF92623.1}; TaxID=451640 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Catenibacterium.;" source="Catenibacterium mitsuokai DSM 15897.;"
hypothetical protein
L3_108_054G1_scaffold_76_8
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7868..9352)
DNA (1485bp) protein (495aa)
Threonine synthase n=1 Tax=Eubacterium eligens CAG:72 RepID=R6AHK7_9FIRM
Threonine synthase {ECO:0000313|EMBL:CDA40622.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
threonine synthase
L3_108_054G1_scaffold_76_9
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9385..9870)
DNA (486bp) protein (162aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit n=1 Tax=Clostridium sp. CAG:43 RepID=R7AHY1_9CLOT
L3_108_054G1_scaffold_76_10
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

Not on your lists

comp(9886..11151)
DNA (1266bp) protein (422aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Roseburia sp. CAG:380 RepID=R6VM02_9FIRM
L3_108_054G1_scaffold_76_11
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(11313..11546)
DNA (234bp) protein (78aa)
Uncharacterised protein {ECO:0000313|EMBL:CRH82161.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
L3_108_054G1_scaffold_76_12
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11653..12609)
DNA (957bp) protein (319aa)
Hydrogenase expression/formation protein HypE n=1 Tax=Eubacterium sp. CAG:86 RepID=R5E1D9_9FIRM
Hydrogenase expression/formation protein HypE {ECO:0000313|EMBL:CCX82011.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
hydrogenase expression/formation protein HypE
L3_108_054G1_scaffold_76_13
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12610..13254)
DNA (645bp) protein (215aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
Endonuclease III n=1 Tax=Roseburia sp. CAG:45 RepID=R6P484_9FIRM
hypothetical protein
L3_108_054G1_scaffold_76_14
Butyrivibrio proteoclasticus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13257..14018)
DNA (762bp) protein (254aa)
trmD; tRNA (guanine-N1)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=515622 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316); (Clostridium proteoclasticum).;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Butyrivibrio proteoclasticus (strain ATCC 51982 / DSM 14932 / B316) RepID=E0RV30_BUTPB
L3_108_054G1_scaffold_76_15
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14069..14875)
DNA (807bp) protein (269aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:252 RepID=R6K805_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB67239.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
hypothetical protein
L3_108_054G1_scaffold_76_16
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14933..16774)
DNA (1842bp) protein (614aa)
UvrABC system protein C n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NEE9_9FIRM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
uvrC; excinuclease ABC subunit C
L3_108_054G1_scaffold_76_17
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16776..18782)
DNA (2007bp) protein (669aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
Transketolase n=1 Tax=Eubacterium sp. CAG:86 RepID=R5DVS4_9FIRM
transketolase
L3_108_054G1_scaffold_76_18
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18890..22846)
DNA (3957bp) protein (1319aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:248 RepID=R6KVU6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB66227.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
hypothetical protein
L3_108_054G1_scaffold_76_19
Clostridium sp. SY8519, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22966..23565)
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Clostridium sp. (strain SY8519) RepID=F7V2B3_CLOSS
hypothetical protein
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1042156 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain SY8519).;"
L3_108_054G1_scaffold_76_20
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23565..23918)
DNA (354bp) protein (118aa)
Nucleoid-associated protein EUBELI_02017 n=2 Tax=Eubacterium RepID=Y2017_EUBE2
hypothetical protein
Nucleoid-associated protein BN765_01300 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
L3_108_054G1_scaffold_76_21
Eubacterium sp. CAG:252, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23920..25602)
DNA (1683bp) protein (561aa)
DNA polymerase n=1 Tax=Eubacterium sp. CAG:252 RepID=R6KCF7_9FIRM
DNA polymerase {ECO:0000313|EMBL:CDB68799.1}; TaxID=1262887 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:252.;"
DNA polymerase
L3_108_054G1_scaffold_76_22
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25614..27230)
DNA (1617bp) protein (539aa)
Uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BW23_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG75855.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Uncharacterized FAD-dependent dehydrogenases
L3_108_054G1_scaffold_76_23
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27227..28483)
DNA (1257bp) protein (419aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N972_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:CDF10004.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
hypothetical protein
L3_108_054G1_scaffold_76_24
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28501..29016)
DNA (516bp) protein (172aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009};; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
Endoribonuclease YbeY n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HER6_9FIRM
hypothetical protein
L3_108_054G1_scaffold_76_25
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29013..30011)
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:86 RepID=R5E7R3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX84176.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L3_108_054G1_scaffold_76_26
Dorea longicatena, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30151..30327)
DNA (177bp) protein (59aa)
30S ribosomal protein S21 n=5 Tax=Lachnospiraceae RepID=A6BDT7_9FIRM
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=411462 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea longicatena DSM 13814.;"
30S ribosomal protein S21
L3_108_054G1_scaffold_76_27
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30450..33137)
DNA (2688bp) protein (896aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
Alanine--tRNA ligase n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HES3_9FIRM
alaS; alanyl-tRNA synthetase
L3_108_054G1_scaffold_76_28
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33150..34856)
DNA (1707bp) protein (569aa)
DNA mismatch repair protein MSH4 n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HAI3_9FIRM
DNA mismatch repair protein MSH4 {ECO:0000313|EMBL:CDE36689.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
DNA mismatch repair protein MSH4
L3_108_054G1_scaffold_76_29
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34874..35401)
DNA (528bp) protein (176aa)
Adenine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084274}; Short=APRT {ECO:0000256|HAMAP-Rule:MF_00004};; EC=2.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00004, ECO:0000256|SAAS:SAAS00084255};; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
Adenine phosphoribosyltransferase n=1 Tax=Eubacterium eligens CAG:72 RepID=R5ZY49_9FIRM
adenine phosphoribosyltransferase
L3_108_054G1_scaffold_76_30
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35419..37383)
DNA (1965bp) protein (655aa)
Fructose-1,6-bisphosphatase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; Short=FBPase class 3 {ECO:0000256|HAMAP-Rule:MF_01854};; EC=3.1.3.11 {ECO:0000256|HAMAP-Rule:MF_01854};; D-fructose-1,6-bisphosphate 1-phosphohydrolase class 3 {ECO:0000256|HAMAP-Rule:MF_01854}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein (EC:3.1.3.11)
fructose-1,6-bisphosphatase n=1 Tax=Blautia producta RepID=UPI000362D581
Displaying items 1-30 of 84 in total

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