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L3_108_054G1_scaffold_88

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Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_054G1_scaffold_88_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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59..226
DNA (168bp) protein (56aa)
50S ribosomal protein L33 n=2069 Tax=Enterobacteriaceae RepID=RL33_CITK8
rpmG; 50S ribosomal subunit protein L33
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
L3_108_054G1_scaffold_88_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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324..1133
DNA (810bp) protein (270aa)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020852}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1444157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S3_C2.;"
Formamidopyrimidine-DNA glycosylase n=921 Tax=Enterobacteriaceae RepID=FPG_ECO24
mutM; formamidopyrimidine-DNA glycosylase
L3_108_054G1_scaffold_88_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1172..1651)
DNA (480bp) protein (160aa)
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
Phosphopantetheine adenylyltransferase n=552 Tax=Escherichia RepID=COAD_ECO45
L3_108_054G1_scaffold_88_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1659..2936)
DNA (1278bp) protein (426aa)
kdtA; 3-deoxy-D-manno-octulosonic-acid transferase (EC:2.-.-.-)
3-deoxy-D-manno-octulosonic-acid transferase n=75 Tax=Escherichia RepID=A1AHG7_ECOK1
3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:EQX24772.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L3_108_054G1_scaffold_88_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3349..4407
DNA (1059bp) protein (353aa)
rfaQ; Lipopolysaccharide core heptosyltransferase rfaQ (EC:2.-.-.-)
Lipopolysaccharide core biosynthesis protein {ECO:0000313|EMBL:CKH01027.1}; EC=2.-.-.- {ECO:0000313|EMBL:CKH01027.1};; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
Lipopolysaccharide core biosynthesis glycosyl transferase RfaQ n=80 Tax=Escherichia RepID=A1AHG6_ECOK1
L3_108_054G1_scaffold_88_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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4404..5528
DNA (1125bp) protein (375aa)
Lipopolysaccharide core biosynthesis glucosyltransferase I {ECO:0000313|EMBL:ABE09602.1}; EC=2.4.1.- {ECO:0000313|EMBL:ABE09602.1};; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
UDP-glucose:(Heptosyl) LPS alpha1,3-glucosyltransferase WaaG n=384 Tax=Enterobacteriaceae RepID=Q9R2L8_ECOLX
glucosyltransferase I RfaG
L3_108_054G1_scaffold_88_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5521..6318
DNA (798bp) protein (266aa)
rfaP; lipopolysaccharide core biosynthesis protein rfaP (EC:2.7.-.-)
Lipopolysaccharide core heptose(I) kinase {ECO:0000256|PIRNR:PIRNR037318}; EC=2.7.1.- {ECO:0000256|PIRNR:PIRNR037318};; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
Lipopolysaccharide core biosynthesis protein RfaP n=80 Tax=Escherichia RepID=A1AHG4_ECOK1
L3_108_054G1_scaffold_88_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6334..7350
DNA (1017bp) protein (339aa)
rfaI; lipopolysaccharide 1,3-galactosyltransferase (EC:2.4.1.44)
Lipopolysaccharide 1,3-galactosyltransferase {ECO:0000313|EMBL:ABE09600.1}; EC=2.4.1.44 {ECO:0000313|EMBL:ABE09600.1};; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
Lipopolysaccharide 1,3-galactosyltransferase n=108 Tax=Escherichia RepID=A1AHG3_ECOK1
L3_108_054G1_scaffold_88_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7367..8362
DNA (996bp) protein (332aa)
rfaJ; lipopolysaccharide 1,2-glucosyltransferase (EC:2.4.1.58)
Lipopolysaccharide 1,2-glucosyltransferase {ECO:0000313|EMBL:ABE09599.1}; EC=2.4.1.58 {ECO:0000313|EMBL:ABE09599.1};; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
Lipopolysaccharide 1,2-glucosyltransferase n=110 Tax=Escherichia RepID=A1AHG2_ECOK1
L3_108_054G1_scaffold_88_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8372..9064
DNA (693bp) protein (231aa)
Heptosyl-II-kinase n=327 Tax=Escherichia RepID=Q8KMW7_ECOLX
lipopolysaccharide core biosynthesis protein
Lipopolysaccharide core heptose(II) kinase rfaY {ECO:0000313|EMBL:EQQ00880.1}; TaxID=1281024 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 87 (4-5977630).;"
L3_108_054G1_scaffold_88_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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9090..10118
DNA (1029bp) protein (343aa)
UDP-galactose:(Galactosyl) LPS alpha1, 2-galactosyl transferase n=305 Tax=Escherichia RepID=Q8KMW6_ECOLX
lipopolysaccharide 1,2-galactosyltransferase
Glycosyltransferase, family 8 {ECO:0000313|EMBL:ESD41937.1}; TaxID=1268991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908519.;"
L3_108_054G1_scaffold_88_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10200..11183
DNA (984bp) protein (328aa)
Beta-1,3-glucosyltransferase n=237 Tax=Escherichia RepID=Q8KMW5_ECOLX
waaV; putative beta1,3-glucosyltransferase
Beta-1,3-glucosyltransferase {ECO:0000313|EMBL:EQX24764.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L3_108_054G1_scaffold_88_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11229..12482
DNA (1254bp) protein (418aa)
Lipid A-core, surface polymer ligase n=224 Tax=Escherichia RepID=A1AHF8_ECOK1
O-antigen polymerase
Lipid A-core surface polymer ligase {ECO:0000313|EMBL:EQX24763.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L3_108_054G1_scaffold_88_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12552..13532)
DNA (981bp) protein (327aa)
ADP-heptose:LPS heptosyl transferase I n=66 Tax=Escherichia RepID=A1AHF7_ECOK1
rfaC; ADP-heptose--LPS heptosyltransferase
Lipopolysaccharide heptosyltransferase 1 {ECO:0000313|EMBL:EQX24762.1}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
L3_108_054G1_scaffold_88_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13536..14582)
DNA (1047bp) protein (349aa)
ADP-heptose-LPS heptosyltransferase II n=403 Tax=Enterobacteriaceae RepID=I7AU21_ECOLX
rfaF; ADP-heptose--LPS heptosyltransferase
ADP-heptose-LPS heptosyltransferase 2 {ECO:0000313|EMBL:EQY14551.1}; TaxID=1281218 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3212-1.;"
L3_108_054G1_scaffold_88_16
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14592..15524)
DNA (933bp) protein (311aa)
rfaD; ADP-L-glycero-D-manno-heptose-6-epimerase (EC:5.1.3.20)
ADP-L-glycero-D-manno-heptose-6-epimerase {ECO:0000256|HAMAP-Rule:MF_01601, ECO:0000256|SAAS:SAAS00055252}; EC=5.1.3.20 {ECO:0000256|HAMAP-Rule:MF_01601, ECO:0000256|SAAS:SAAS00055236};; ADP-L-glycero-beta-D-manno-heptose-6-epimerase {ECO:0000256|HAMAP-Rule:MF_01601}; TaxID=42897 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 2a.;"
ADP-L-glycero-D-manno-heptose-6-epimerase n=616 Tax=Enterobacteriaceae RepID=HLDD_ECO45
L3_108_054G1_scaffold_88_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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15738..16934
DNA (1197bp) protein (399aa)
kbl; 2-amino-3-ketobutyrate coenzyme A ligase (EC:2.3.1.29)
2-amino-3-ketobutyrate coenzyme A ligase {ECO:0000256|HAMAP-Rule:MF_00985}; Short=AKB ligase {ECO:0000256|HAMAP-Rule:MF_00985};; EC=2.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00985};; Glycine acetyltransferase {ECO:0000256|HAMAP-Rule:MF_00985}; TaxID=1281200 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UMEA 3162-1).;"
Glycine C-acetyltransferase n=106 Tax=Escherichia RepID=B7MFI1_ECO45
L3_108_054G1_scaffold_88_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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16944..17969
DNA (1026bp) protein (342aa)
tdh; L-threonine 3-dehydrogenase (EC:1.1.1.103)
L-threonine 3-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053}; EC=1.1.1.103 {ECO:0000256|HAMAP-Rule:MF_00627, ECO:0000256|SAAS:SAAS00056053};; TaxID=562 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli.;"
L-threonine 3-dehydrogenase n=305 Tax=Enterobacteriaceae RepID=TDH_ECO27
L3_108_054G1_scaffold_88_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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18208..19242
DNA (1035bp) protein (345aa)
Predicted glycosyl transferase YibD n=188 Tax=Escherichia RepID=A1AHF2_ECOK1
yibD; glycosyl transferase family protein
Putative glycosyl transferase {ECO:0000313|EMBL:CAR05241.1}; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
L3_108_054G1_scaffold_88_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(19229..20188)
DNA (960bp) protein (320aa)
Polysaccharide deacetylase family protein n=195 Tax=Escherichia RepID=D5D4B9_ECOKI
hypothetical protein
Putative polysaccharide deacetylase {ECO:0000313|EMBL:CAR05240.1}; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
L3_108_054G1_scaffold_88_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20192..21451)
DNA (1260bp) protein (420aa)
Protease with a role in cell division n=302 Tax=Escherichia RepID=A1AHF0_ECOK1
envC; hypothetical protein
Protease with a role in cell division {ECO:0000313|EMBL:EOW02318.1}; TaxID=1182698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE98.;"
L3_108_054G1_scaffold_88_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21485..23029)
DNA (1545bp) protein (515aa)
phosphoglyceromutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058362}; Short=BPG-independent PGAM {ECO:0000256|HAMAP-Rule:MF_01038};; Short=Phosphoglyceromutase {ECO:0000256|HAMAP-Rule:MF_01038};; Short=iPGM {ECO:0000256|HAMAP-Rule:MF_01038};; EC=5.4.2.12 {ECO:0000256|HAMAP-Rule:MF_01038, ECO:0000256|SAAS:SAAS00058367};; TaxID=1165939 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O111:H11 str. CVM9455.;"
2,3-bisphosphoglycerate-independent phosphoglycerate mutase n=534 Tax=Enterobacteriaceae RepID=GPMI_ECOK1
L3_108_054G1_scaffold_88_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23274..23705
DNA (432bp) protein (144aa)
Uncharacterized protein YibN n=1279 Tax=Enterobacteriaceae RepID=YIBN_ECO57
yibN; hypothetical protein
Rhodanese-like domain protein {ECO:0000313|EMBL:EHU51143.1}; TaxID=868142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2E.;"
L3_108_054G1_scaffold_88_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23846..24097
DNA (252bp) protein (84aa)
Glutaredoxin-3 n=1352 Tax=Enterobacteriaceae RepID=GLRX3_ECO57
grxC; glutaredoxin
Glutaredoxin-3 {ECO:0000313|EMBL:EOV74617.1}; TaxID=1182680 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE73.;"
L3_108_054G1_scaffold_88_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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24161..24628
DNA (468bp) protein (156aa)
Protein-export protein SecB n=433 Tax=Enterobacteriaceae RepID=SECB_ECO27
preprotein translocase subunit SecB
Protein-export protein SecB {ECO:0000256|HAMAP-Rule:MF_00821}; TaxID=941323 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli VR50.;"
L3_108_054G1_scaffold_88_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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24628..25647
DNA (1020bp) protein (340aa)
gpsA; glycerol-3-phosphate dehydrogenase (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1273 Tax=Enterobacteriaceae RepID=GPDA_ECO24
L3_108_054G1_scaffold_88_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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25727..26548
DNA (822bp) protein (274aa)
cysE; serine acetyltransferase (EC:2.3.1.30)
Serine acetyltransferase {ECO:0000313|EMBL:CDK45554.1}; EC=2.3.1.30 {ECO:0000313|EMBL:CDK45554.1};; TaxID=1433131 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS1.;"
Serine acetyltransferase n=1372 Tax=Enterobacteriaceae RepID=CYSE_ECO57
L3_108_054G1_scaffold_88_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26603..27076)
DNA (474bp) protein (158aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=868142 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC2E.;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=634 Tax=Escherichia RepID=TRML_ECOL6
TrmH family RNA methyltransferase
L3_108_054G1_scaffold_88_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27124..28314)
DNA (1191bp) protein (397aa)
lldD; L-lactate dehydrogenase (EC:1.1.2.3)
L-lactate dehydrogenase {ECO:0000255|HAMAP-Rule:MF_01559}; EC=1.1.-.- {ECO:0000255|HAMAP-Rule:MF_01559};; TaxID=585035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O45:K1 (strain S88 / ExPEC).;"
L-lactate dehydrogenase [cytochrome] n=76 Tax=Escherichia RepID=LLDD_ECO45
L3_108_054G1_scaffold_88_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(28311..29087)
DNA (777bp) protein (259aa)
DNA-binding transcriptional repressor LldR n=442 Tax=Escherichia RepID=G7R3B5_ECOC2
lldR; DNA-binding transcriptional repressor LldR
Putative L-lactate dehydrogenase operon regulatory protein {ECO:0000313|EMBL:ESD77391.1}; TaxID=1268998 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908573.;"
Displaying items 1-30 of 89 in total

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