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L3_108_054G1_scaffold_107

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_054G1_scaffold_107_1
unknown

Not on your lists

comp(3..62)
DNA (60bp) protein (20aa)

This feature has no annotations

L3_108_054G1_scaffold_107_2
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

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324..755
DNA (432bp) protein (144aa)
DNA-binding protein n=1 Tax=Anaerococcus obesiensis RepID=UPI00030B2D73
Anaerobic benzoate catabolism transcriptional regulator {ECO:0000313|EMBL:CRH81845.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
hypothetical protein
L3_108_054G1_scaffold_107_3
Anaerococcus prevotii, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

767..1951
DNA (1185bp) protein (395aa)
Putative uncharacterized protein n=1 Tax=Anaerococcus prevotii ACS-065-V-Col13 RepID=F0GXH3_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EGC81501.1}; TaxID=879305 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus prevotii ACS-065-V-Col13.;"
hypothetical protein
L3_108_054G1_scaffold_107_4
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(2140..3123)
DNA (984bp) protein (328aa)
GMP synthase (glutamine-hydrolyzing) {ECO:0000256|SAAS:SAAS00008728}; EC=6.3.5.2 {ECO:0000256|SAAS:SAAS00008728};; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit (EC:6.3.5.2)
GMP synthase 2 n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6ERE1_9FIRM
L3_108_054G1_scaffold_107_5
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3402..4460
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:257 RepID=R5XM03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA05407.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
periplasmic binding protein
L3_108_054G1_scaffold_107_6
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4496..5491
DNA (996bp) protein (332aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BYG7_9CLOT
Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:EEG74895.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
transport system permease
L3_108_054G1_scaffold_107_7
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

5488..6579
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:257 RepID=R5WS33_9FIRM
Probable siderophore transport system permease protein yfhA {ECO:0000313|EMBL:CRH79010.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
ABC-type enterobactin transport system, permease component
L3_108_054G1_scaffold_107_8
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6579..7382
DNA (804bp) protein (268aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0BYG9_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG74897.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
ABC transporter
L3_108_054G1_scaffold_107_9
Lachnospiraceae bacterium M18-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7422..8213)
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium M18-1 RepID=R9JXD1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS35917.1}; TaxID=1235792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium M18-1.;"
hypothetical protein
L3_108_054G1_scaffold_107_10
Chlamydia trachomatis, Chlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(8311..8799)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:632 RepID=R5JWU1_9CLOT
Protein of uncharacterised function (DUF3021) {ECO:0000313|EMBL:CRH81372.1}; TaxID=813 species="Bacteria; Chlamydiae; Chlamydiales; Chlamydiaceae; Chlamydia/Chlamydophila group; Chlamydia.;" source="Chlamydia trachomatis.;"
hypothetical protein
L3_108_054G1_scaffold_107_11
Eubacterium rectale CAG:36, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8813..9247)
DNA (435bp) protein (145aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI00035E4CFC
Uncharacterized protein {ECO:0000313|EMBL:CDC72564.1}; TaxID=1263079 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium rectale CAG:36.;"
hypothetical protein
L3_108_054G1_scaffold_107_12
Firmicutes bacterium CAG:95, Firmicutes, Bacteria

Not on your lists

comp(9414..10265)
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Butyrivibrio sp. AD3002 RepID=UPI0003B5A034
Uncharacterized protein {ECO:0000313|EMBL:CDF08406.1}; TaxID=1262988 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:95.;"
EDD domain protein, DegV family
L3_108_054G1_scaffold_107_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10299..11051)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VT19_9CLOT
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04367.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_108_054G1_scaffold_107_14
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11090..13936)
DNA (2847bp) protein (949aa)
UvrABC system protein A n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NC95_9FIRM
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
excinuclease ABC subunit A
L3_108_054G1_scaffold_107_15
[Eubacterium] eligens, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13968..16088)
DNA (2121bp) protein (707aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens (strain ATCC 27750 / VPI C15-48) RepID=C4Z4M4_EUBE2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACR72913.1}; TaxID=515620 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium eligens (strain ATCC 27750 / VPI C15-48).;"
L3_108_054G1_scaffold_107_16
unknown

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comp(16100..16768)
DNA (669bp) protein (223aa)

This feature has no annotations

L3_108_054G1_scaffold_107_17
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16783..17268)
DNA (486bp) protein (162aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
dCMP deaminase n=1 Tax=Eubacterium sp. CAG:248 RepID=R6KTW8_9FIRM
dCMP deaminase {ECO:0000313|EMBL:CDB65547.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
L3_108_054G1_scaffold_107_18
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17288..17716)
DNA (429bp) protein (143aa)
Ribose-5-phosphate isomerase B {ECO:0000313|EMBL:EET59599.1}; EC=5.3.1.6 {ECO:0000313|EMBL:EET59599.1};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
Ribose-5-phosphate isomerase B n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LIL7_9FIRM
galactose-6-phosphate isomerase
L3_108_054G1_scaffold_107_19
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17697..18206)
DNA (510bp) protein (170aa)
Protein-tyrosine phosphatase n=1 Tax=Eubacterium sp. CAG:76 RepID=R7N823_9FIRM
Protein-tyrosine phosphatase {ECO:0000313|EMBL:CDF09599.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
protein-tyrosine phosphatase
L3_108_054G1_scaffold_107_20
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18203..19291)
DNA (1089bp) protein (363aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
Putative translation factor n=1 Tax=Eubacterium eligens CAG:72 RepID=R6AGJ4_9FIRM
translation factor
L3_108_054G1_scaffold_107_21
Eubacterium sp. CAG:76, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19413..21182)
DNA (1770bp) protein (590aa)
Glycoside Hydrolase Family 18 protein n=1 Tax=Eubacterium sp. CAG:76 RepID=R7NBV7_9FIRM
Glycoside Hydrolase Family 18 protein {ECO:0000313|EMBL:CDF09602.1}; TaxID=1262892 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:76.;"
Predicted glycosyl hydrolase
L3_108_054G1_scaffold_107_22
Coprococcus sp. ART55/1, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21605..22567
DNA (963bp) protein (321aa)
Negative regulator of genetic competence, sporulation and motility n=2 Tax=Coprococcus RepID=D5HED0_9FIRM
Negative regulator of genetic competence, sporulation and motility
Negative regulator of genetic competence, sporulation and motility {ECO:0000313|EMBL:CBK83263.1}; TaxID=751585 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. ART55/1.;"
L3_108_054G1_scaffold_107_23
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22613..23437)
DNA (825bp) protein (275aa)
Putative TrmH family tRNA/rRNA methyltransferase {ECO:0000313|EMBL:KJJ69595.1}; EC=2.1.1.- {ECO:0000313|EMBL:KJJ69595.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HSD0_9CLOT
rRNA methylase, putative, group 3
L3_108_054G1_scaffold_107_24
[Bacteroides] pectinophilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23424..24014)
DNA (591bp) protein (197aa)
UPF0340 protein BACPEC_00820 n=2 Tax=Bacteria RepID=R7B0H7_9BACE
UPF0340 protein BACPEC_00820 {ECO:0000256|HAMAP-Rule:MF_00800}; TaxID=483218 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="[Bacteroides] pectinophilus ATCC 43243.;"
conserved hypothetical protein TIGR01440
L3_108_054G1_scaffold_107_25
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24026..25117)
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens CAG:72 RepID=R5ZWA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA38826.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
hypothetical protein
L3_108_054G1_scaffold_107_26
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25120..25974)
DNA (855bp) protein (285aa)
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
Glutamate racemase n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IMY6_9FIRM
glutamate racemase
L3_108_054G1_scaffold_107_27
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26049..26441)
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:248 RepID=R6JUK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB66463.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
L3_108_054G1_scaffold_107_28
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26579..27367)
DNA (789bp) protein (263aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N1A0_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
ABC-2 type transporter.
L3_108_054G1_scaffold_107_29
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(27333..27644)
DNA (312bp) protein (104aa)
ABC-type multidrug transport system, ATPase component n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LSH1_9FIRM
ABC-type multidrug transport system, ATPase component
ABC-type multidrug transport system, ATPase component {ECO:0000313|EMBL:CBL23729.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L3_108_054G1_scaffold_107_30
unknown

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comp(27632..27775)
DNA (144bp) protein (48aa)

This feature has no annotations

Displaying items 1-30 of 65 in total

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