ggKbase home page

L3_108_054G1_scaffold_351

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_054G1_scaffold_351_1
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

93..860
DNA (768bp) protein (256aa)
EDD domain protein, DegV family n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C402_9CLOT
EDD domain protein, DegV family {ECO:0000313|EMBL:EEG73160.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
EDD domain protein, DegV family
L3_108_054G1_scaffold_351_2
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(925..1458)
DNA (534bp) protein (178aa)
Putative membrane protein n=1 Tax=Clostridium botulinum E1 str. 'BoNT E Beluga' RepID=C5UPQ1_CLOBO
Putative membrane protein {ECO:0000313|EMBL:EES51034.1}; TaxID=536233 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum E1 str. 'BoNT E Beluga'.;"
hypothetical protein
L3_108_054G1_scaffold_351_3
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1781..2002)
DNA (222bp) protein (74aa)
ABC transporter-like protein n=1 Tax=Clostridium tetani 12124569 RepID=U6EWM4_CLOTA
ABC transporter-like protein
ABC transporter-like protein {ECO:0000313|EMBL:CDI49992.1}; TaxID=1231072 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetani 12124569.;"
L3_108_054G1_scaffold_351_4
Clostridium cellulovorans, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2285..2926)
DNA (642bp) protein (214aa)
Probable transaldolase {ECO:0000256|HAMAP-Rule:MF_00494}; EC=2.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00494};; TaxID=573061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 /; 743B).;"
Probable transaldolase n=1 Tax=Clostridium cellulovorans (strain ATCC 35296 / DSM 3052 / OCM 3 / 743B) RepID=D9SUV6_CLOC7
transaldolase
L3_108_054G1_scaffold_351_5
Clostridium sp. CAG:269, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3015..3950)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:269 RepID=R7IV96_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE55505.1}; TaxID=1262788 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:269.;"
transketolase
L3_108_054G1_scaffold_351_6
Clostridium sp. CAG:356, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3952..4767)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:356 RepID=R7A3Q7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD37377.1}; TaxID=1262800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:356.;"
transketolase
L3_108_054G1_scaffold_351_7
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4778..6052)
DNA (1275bp) protein (425aa)
Ascorbate-specific PTS system enzyme IIC n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G5Q5_9FIRM
Ascorbate-specific PTS system enzyme IIC {ECO:0000313|EMBL:EFW06556.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
sugar-specific permease SgaT/UlaA
L3_108_054G1_scaffold_351_8
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6070..6351)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G5Q4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW06555.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
PTS system lactose/cellobiose-specific transporter subunit IIB
L3_108_054G1_scaffold_351_9
Coprobacillus sp. 29_1, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(6365..8476)
DNA (2112bp) protein (704aa)
Uncharacterized protein n=1 Tax=Coprobacillus sp. 29_1 RepID=E7G5Q3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFW06554.1}; TaxID=469596 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 29_1.;"
PTS modulated transcriptional regulator MtlR family
L3_108_054G1_scaffold_351_10
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8783..11215)
DNA (2433bp) protein (811aa)
homocysteine methyltransferase n=1 Tax=Clostridium botulinum RepID=UPI0002D9B431
B12 binding domain protein {ECO:0000313|EMBL:AIY80201.1}; TaxID=1415774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum 202F.;"
5-methyltetrahydrofolate--homocysteine methyltransferase
L3_108_054G1_scaffold_351_11
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11169..11858)
DNA (690bp) protein (230aa)
Vitamin B12 dependent methionine synthase, activation region n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MTD8_CLOSA
vitamin B12 dependent methionine synthase, activation region
Vitamin B12 dependent methionine synthase, activation region {ECO:0000313|EMBL:AGX44039.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_108_054G1_scaffold_351_12
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11848..12303)
DNA (456bp) protein (152aa)
luxS; S-ribosylhomocysteinase (EC:4.4.1.21)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
S-ribosylhomocysteine lyase n=2 Tax=Clostridium botulinum B RepID=B2TP85_CLOBB
L3_108_054G1_scaffold_351_13
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12317..13204)
DNA (888bp) protein (296aa)
metF; 5,10-methylenetetrahydrofolate reductase (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=935198 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Eklund 17B / Type B).;"
Methylenetetrahydrofolate reductase n=2 Tax=Clostridium botulinum B RepID=B2TP86_CLOBB
L3_108_054G1_scaffold_351_14
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13445..14191)
DNA (747bp) protein (249aa)
ssuB2; aliphatic sulfonates import ATP-binding protein SsuB (EC:3.6.3.-)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9H864_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98700.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
L3_108_054G1_scaffold_351_15
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14172..15176)
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HH92_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98701.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic component
L3_108_054G1_scaffold_351_16
Clostridium sp. 7_2_43FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15178..15954)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=V9HFQ4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEH98702.1}; TaxID=457396 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_2_43FAA.;"
ABC transporter permease protein
L3_108_054G1_scaffold_351_17
Clostridium saccharobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16224..16859)
DNA (636bp) protein (212aa)
Hydrolase of PHP superfamily n=1 Tax=Clostridium saccharobutylicum DSM 13864 RepID=U5MS72_CLOSA
ycfH; hydrolase of PHP superfamily
Hydrolase of PHP superfamily {ECO:0000313|EMBL:AGX43430.1}; TaxID=1345695 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium saccharobutylicum DSM 13864.;"
L3_108_054G1_scaffold_351_18
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17249..18133)
DNA (885bp) protein (295aa)
UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9CF19_9CLOT
UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase {ECO:0000313|EMBL:EOR27640.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
tagO; UDP-GlcNAc:undecaprenyl-P GlcNAc 1-P transferase
L3_108_054G1_scaffold_351_19
Bacillus akibai, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18374..19687)
DNA (1314bp) protein (438aa)
Extracellular solute-binding protein family 1 n=1 Tax=Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) RepID=E6TZ15_BACCJ
ABC-type sugar transport system {ECO:0000313|EMBL:GAE34472.1}; TaxID=1236973 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus akibai (strain ATCC 43226 / DSM 21942 / JCM 9157 / 1139).;"
hypothetical protein
L3_108_054G1_scaffold_351_20
Bacillus cellulosilyticus, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19701..22274)
DNA (2574bp) protein (858aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141 / JCM 9156 / N-4) RepID=E6TZ16_BACCJ
diguanylate cyclase/phosphodiesterase
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ADU32459.1}; TaxID=649639 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus cellulosilyticus (strain ATCC 21833 / DSM 2522 / FERM P-1141; / JCM 9156 / N-4).;"
L3_108_054G1_scaffold_351_21
Clostridium butyricum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22469..22558)
DNA (90bp) protein (30aa)
V-type ATP synthase subunit D (EC:3.6.3.14)
V-type ATP synthase subunit D n=2 Tax=Clostridium butyricum RepID=M8KGR6_CLOBU
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=997898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium butyricum 60E.3.;"
Displaying 21 items

View Taxonomy