ggKbase home page

L3_108_054G1_scaffold_382

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_054G1_scaffold_382_1
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3..98)
DNA (96bp) protein (32aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=14 Tax=Clostridium perfringens RepID=EFTU_CLOP1
Elongation factor Tu {ECO:0000255|HAMAP-Rule:MF_00118}; Short=EF-Tu {ECO:0000255|HAMAP-Rule:MF_00118};; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_108_054G1_scaffold_382_2
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(273..2345)
DNA (2073bp) protein (691aa)
Elongation factor G n=1 Tax=Clostridium colicanis 209318 RepID=N9XYX0_9CLOT
fusA; translation elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_054G1_scaffold_382_3
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2420..2890)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Clostridium colicanis 209318 RepID=N9XM65_9CLOT
rpsG; ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_054G1_scaffold_382_4
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3039..3413)
DNA (375bp) protein (125aa)
30S ribosomal protein S12 n=1 Tax=Clostridium colicanis 209318 RepID=N9XXZ7_9CLOT
rpsL; ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_054G1_scaffold_382_5
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3618..7154)
DNA (3537bp) protein (1179aa)
rpoC; DNA-directed RNA polymerase, beta' subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000313|EMBL:AIY83388.1};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
DNA-directed RNA polymerase subunit beta' n=1 Tax=Clostridium colicanis 209318 RepID=N9WD83_9CLOT
L3_108_054G1_scaffold_382_6
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7175..10879)
DNA (3705bp) protein (1235aa)
rpoB; DNA-directed RNA polymerase, beta subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:AIY84610.1};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium colicanis 209318 RepID=N9WCP3_9CLOT
L3_108_054G1_scaffold_382_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11244..11609)
DNA (366bp) protein (122aa)
50S ribosomal protein L7/L12 n=1 Tax=Clostridium colicanis 209318 RepID=N9XYX4_9CLOT
rplL; ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_054G1_scaffold_382_8
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(11659..12162)
DNA (504bp) protein (168aa)
50S ribosomal protein L10 n=1 Tax=Clostridium chauvoei JF4335 RepID=S6FD88_9CLOT
ribosomal L10 family protein
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_054G1_scaffold_382_9
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(12373..13062)
DNA (690bp) protein (230aa)
50S ribosomal protein L1 n=1 Tax=Clostridium colicanis 209318 RepID=N9XY02_9CLOT
rplA; ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_054G1_scaffold_382_10
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(13116..13541)
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=2 Tax=Clostridium RepID=G7LYY8_9CLOT
rplK; ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sullivan.;"
L3_108_054G1_scaffold_382_11
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13630..14151)
DNA (522bp) protein (174aa)
Transcription termination/antitermination protein NusG n=1 Tax=Clostridium celatum DSM 1785 RepID=L1QGX0_9CLOT
nusG; transcription termination/antitermination factor NusG
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_054G1_scaffold_382_12
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14182..14412)
DNA (231bp) protein (77aa)
Protein translocase subunit SecE n=1 Tax=Clostridium colicanis 209318 RepID=N9XYX9_9CLOT
secE; preprotein translocase, SecE subunit
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
L3_108_054G1_scaffold_382_13
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14840..15013)
DNA (174bp) protein (58aa)
Elongation factor Tu n=5 Tax=Clostridium butyricum RepID=B1QUE9_CLOBU
tuf; translation elongation factor Tu
Uncharacterized protein {ECO:0000313|EMBL:KJU71525.1}; Flags: Fragment;; TaxID=1561 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii.;"
Displaying 13 items

View Taxonomy