ggKbase home page

L3_108_103G1_scaffold_1254

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_103G1_scaffold_1254_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..277
DNA (276bp) protein (92aa)
Bacterial extracellular solute-binding s, 3 family protein n=1 Tax=Bifidobacterium longum subsp. longum CECT 7347 RepID=T2HZS3_BIFLN
Solute-binding protein of ABC transporter system
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EFE89013.1}; Putative ABC transporter substrate binding component {ECO:0000313|EMBL:BAQ99482.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L3_108_103G1_scaffold_1254_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

411..1352
DNA (942bp) protein (314aa)
ABC transporter substrate-binding protein n=5 Tax=Bifidobacterium longum RepID=F8ASB9_BIFLN
ABC transporter substrate-binding protein
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:EEQ54223.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L3_108_103G1_scaffold_1254_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1483..2466
DNA (984bp) protein (328aa)
Permease protein of ABC transporter system n=7 Tax=Bifidobacterium RepID=F8ASB8_BIFLN
ABC transporter permease
ABC transporter, permease protein {ECO:0000313|EMBL:EEI81208.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_108_103G1_scaffold_1254_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2483..3313
DNA (831bp) protein (277aa)
ABC-type polar amino acid transport system ATPase component n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSY1_BIFLJ
polar amino acid ABC transporter ATPase
ABC-type polar amino acid transport system ATPase component {ECO:0000313|EMBL:ADG99986.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_1254_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3554..5446
DNA (1893bp) protein (631aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3ASP8_BIFLN
glmS; glucosamine--fructose-6-phosphate aminotransferase
L3_108_103G1_scaffold_1254_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5490..6224
DNA (735bp) protein (245aa)
Pseudouridine synthase n=3 Tax=Bifidobacterium RepID=C5E8K2_BIFLI
pseudouridine synthase
Ribosomal pseudouridine synthase {ECO:0000313|EMBL:AEI97995.1}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L3_108_103G1_scaffold_1254_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6269..7582)
DNA (1314bp) protein (438aa)
HipA domain-containing protein {ECO:0000313|EMBL:KFI71927.1}; EC=2.7.11.1 {ECO:0000313|EMBL:KFI71927.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
HipA domain protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSY4_BIFLJ
transcriptional regulator
L3_108_103G1_scaffold_1254_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7572..7811)
DNA (240bp) protein (80aa)
DNA-binding helix-turn-helix protein n=8 Tax=Bifidobacterium longum RepID=C5E8J9_BIFLI
DNA-binding protein
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EEI81203.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_108_103G1_scaffold_1254_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7977..8987)
DNA (1011bp) protein (337aa)
Regulatory protein, LacI n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSY6_BIFLJ
LacI-type transcriptional regulator {ECO:0000313|EMBL:KFI71925.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
regulatory protein LacI
L3_108_103G1_scaffold_1254_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9210..10136
DNA (927bp) protein (309aa)
Probable permease of ABC transporter system for sugars n=1 Tax=Bifidobacterium longum (strain NCC 2705) RepID=Q8G550_BIFLO
ABC transporter permease
ABC transporter permease component {ECO:0000313|EMBL:BAJ66110.1}; TaxID=565042 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 /; JCM 1217 / NCTC 11818 / E194b).;"
L3_108_103G1_scaffold_1254_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10195..11202
DNA (1008bp) protein (336aa)
Sugar ABC transporter permease n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSY8_BIFLJ
ABC transporter permease
Sugar ABC transporter permease {ECO:0000313|EMBL:ADG99993.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_1254_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11416..12192
DNA (777bp) protein (259aa)
Beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
Beta-galactosidase n=4 Tax=Bifidobacterium RepID=D6ZSZ0_BIFLJ
Displaying 12 items

View Taxonomy