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L3_108_103G1_scaffold_1629

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_103G1_scaffold_1629_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..418)
DNA (417bp) protein (139aa)
Hydrogenase accessory protein HypB n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1X9_RUMGN
Hydrogenase accessory protein HypB {ECO:0000313|EMBL:EDN78251.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hydrogenase accessory protein HypB
L3_108_103G1_scaffold_1629_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(785..2044)
DNA (1260bp) protein (420aa)
Phosphoenolpyruvate carboxykinase [ATP] {ECO:0000256|HAMAP-Rule:MF_00453}; Short=PCK {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00453};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00453};; EC=4.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00453};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
phosphoenolpyruvate carboxykinase (ATP) (EC:4.1.1.49)
Phosphoenolpyruvate carboxykinase [ATP] n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TY81_9FIRM
L3_108_103G1_scaffold_1629_3
unknown

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2091..2213
DNA (123bp) protein (41aa)

This feature has no annotations

L3_108_103G1_scaffold_1629_4
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2182..3042
DNA (861bp) protein (287aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Ruminococcus obeum A2-162 RepID=D4LYT3_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBL22786.1}; TaxID=657314 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum A2-162.;"
L3_108_103G1_scaffold_1629_5
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3047..3799)
DNA (753bp) protein (251aa)
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain n=1 Tax=Blautia sp. CAG:237 RepID=R6L6J1_9FIRM
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:CDB77796.1}; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
L3_108_103G1_scaffold_1629_6
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3801..5603)
DNA (1803bp) protein (601aa)
Histidine kinase-DNA gyrase B-and HSP90-like ATPase./Histidine kinase./HAMP domain n=1 Tax=Blautia sp. CAG:237 RepID=R6KWC7_9FIRM
Histidine kinase-DNA gyrase B-and HSP90-like ATPase./Histidine kinase./HAMP domain {ECO:0000313|EMBL:CDB77795.1}; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Histidine kinase./HAMP domain.
L3_108_103G1_scaffold_1629_7
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5804..7132
DNA (1329bp) protein (443aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Ruminococcus sp. SR1/5 RepID=D4LNI8_9FIRM
ABC-type sugar transport system, periplasmic component
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:CBL21399.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_108_103G1_scaffold_1629_8
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7243..8124
DNA (882bp) protein (294aa)
Carbohydrate ABC transporter membrane protein 1 CUT1 family n=1 Tax=Blautia sp. CAG:237 RepID=R6KRA1_9FIRM
Carbohydrate ABC transporter membrane protein 1 CUT1 family {ECO:0000313|EMBL:CDB77793.1}; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
CUT1 family carbohydrate ABC transporter membrane protein 1
L3_108_103G1_scaffold_1629_9
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8125..8943
DNA (819bp) protein (273aa)
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Blautia sp. CAG:237 RepID=R6LUU0_9FIRM
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDB77792.1}; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_108_103G1_scaffold_1629_10
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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8956..11037
DNA (2082bp) protein (694aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KHH1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN33035.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
alpha-L-fucosidase
L3_108_103G1_scaffold_1629_11
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11184..12269)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KHH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN33042.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
oxidoreductase domain-containing protein
L3_108_103G1_scaffold_1629_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12623..12832
DNA (210bp) protein (70aa)
Protein translocase subunit SecE n=2 Tax=Clostridiales RepID=A7B1Y3_RUMGN
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
protein translocase subunit secE/sec61 gamma
L3_108_103G1_scaffold_1629_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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12859..13377
DNA (519bp) protein (173aa)
Transcription termination/antitermination protein NusG n=4 Tax=Clostridiales RepID=A7B1Y4_RUMGN
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
transcription antitermination protein nusG
L3_108_103G1_scaffold_1629_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13431..13856
DNA (426bp) protein (142aa)
50S ribosomal protein L11 n=3 Tax=Clostridiales RepID=A7B1Y5_RUMGN
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
LSU ribosomal protein L11P
L3_108_103G1_scaffold_1629_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14015..14338
DNA (324bp) protein (108aa)
50S ribosomal protein L1 n=4 Tax=Clostridiales RepID=A7B1Y6_RUMGN
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
ribosomal protein L1, bacterial/chloroplast
L3_108_103G1_scaffold_1629_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14682..15227
DNA (546bp) protein (182aa)
50S ribosomal protein L10 n=4 Tax=Clostridiales RepID=A7B1Y7_RUMGN
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
rplJ; 50S ribosomal protein L10
L3_108_103G1_scaffold_1629_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15337..15714
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=1 Tax=Lachnospiraceae bacterium 6_1_37FAA RepID=E9RWY1_9FIRM
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
LSU ribosomal protein L12P
L3_108_103G1_scaffold_1629_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15995..19852
DNA (3858bp) protein (1286aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=2 Tax=Clostridiales RepID=R5UAW2_9FIRM
L3_108_103G1_scaffold_1629_19
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19867..24156
DNA (4290bp) protein (1430aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UHL6_9FIRM
L3_108_103G1_scaffold_1629_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24236..24385)
DNA (150bp) protein (50aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B1Z3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46801.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_108_103G1_scaffold_1629_21
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24509..25222)
DNA (714bp) protein (238aa)
Response regulator receiver domain protein n=4 Tax=Clostridiales RepID=A7B1Z5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46800.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
winged helix family two component transcriptional regulator
L3_108_103G1_scaffold_1629_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25215..26285)
DNA (1071bp) protein (357aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=3 Tax=Lachnospiraceae RepID=A7B1Z6_RUMGN
L3_108_103G1_scaffold_1629_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26671..28524
DNA (1854bp) protein (618aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound sodium-translocating pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; Pyrophosphate-energized inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01129}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
vacuolar-type H(+)-translocating pyrophosphatase (EC:3.6.1.1)
Putative K(+)-stimulated pyrophosphate-energized sodium pump n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TR86_9FIRM
Displaying 23 items

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