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L3_108_103G1_scaffold_418

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_103G1_scaffold_418_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..430
DNA (429bp) protein (143aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MS22_BIFL1
DNA-directed RNA polymerase beta subunit
L3_108_103G1_scaffold_418_2
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(574..2445)
DNA (1872bp) protein (624aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GAB3_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22378.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_108_103G1_scaffold_418_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2447..4105
DNA (1659bp) protein (553aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
DNA-directed RNA polymerase subunit beta' n=3 Tax=Bifidobacterium longum RepID=B7GUG6_BIFLS
DNA-directed RNA polymerase beta' subunit
L3_108_103G1_scaffold_418_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4519..5145)
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=E8MMC5_BIFLS
Forkhead domain protein {ECO:0000313|EMBL:KFI71988.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L3_108_103G1_scaffold_418_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5161..5772)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GUG4_BIFLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACJ53110.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
L3_108_103G1_scaffold_418_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5799..6731)
DNA (933bp) protein (311aa)
Phosphoprotein phosphatase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSV1_BIFLJ
ppp; phosphoprotein phosphatase
Phosphoprotein phosphatase {ECO:0000313|EMBL:ADG99956.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_418_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6728..9241)
DNA (2514bp) protein (838aa)
Transglutaminase domain protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSV2_BIFLJ
Transglutaminase domain protein {ECO:0000313|EMBL:ADG99957.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
transglutaminase domain-containing protein
L3_108_103G1_scaffold_418_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9238..10461)
DNA (1224bp) protein (408aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSV3_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADG99958.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_418_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10486..12057)
DNA (1572bp) protein (524aa)
ATPase associated with various cellular activities, AAA_3 n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSV4_BIFLJ
ATPase {ECO:0000313|EMBL:KFI71993.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
ATPase AAA
L3_108_103G1_scaffold_418_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12068..18052)
DNA (5985bp) protein (1995aa)
Fibronectin type III domain-containing protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSV5_BIFLJ
ATPase AAA
Fibronectin type III domain-containing protein {ECO:0000313|EMBL:ADG99960.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_418_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18218..19639)
DNA (1422bp) protein (474aa)
Protein kinase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSV6_BIFLJ
protein kinase
Kinase {ECO:0000313|EMBL:KEY33177.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_108_103G1_scaffold_418_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19771..24036
DNA (4266bp) protein (1422aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSV7_BIFLJ
PD-(D/E)XK nuclease family protein {ECO:0000313|EMBL:KFI71996.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
nuclease
L3_108_103G1_scaffold_418_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24033..28055
DNA (4023bp) protein (1341aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
UvrD/REP helicase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSV8_BIFLJ
ATP-dependent DNA helicase UvrD
L3_108_103G1_scaffold_418_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28268..29587
DNA (1320bp) protein (440aa)
Major facilitator superfamily MFS_1 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GUF7_BIFLS
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACJ53103.1}; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
L3_108_103G1_scaffold_418_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29924..30679
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
4-hydroxy-tetrahydrodipicolinate reductase n=5 Tax=Bifidobacterium longum RepID=E8MH34_BIFL2
dihydrodipicolinate reductase
L3_108_103G1_scaffold_418_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30810..31736
DNA (927bp) protein (309aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1682 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis.;"
4-hydroxy-tetrahydrodipicolinate synthase n=2 Tax=Bifidobacterium longum RepID=D6ZSW1_BIFLJ
dihydrodipicolinate synthase
L3_108_103G1_scaffold_418_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31779..33671
DNA (1893bp) protein (631aa)
Uncharacterized protein n=9 Tax=Bifidobacterium RepID=Q8G528_BIFLO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAN24997.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_108_103G1_scaffold_418_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33713..36322
DNA (2610bp) protein (870aa)
Aminopeptidase N n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSW3_BIFLJ
aminopeptidase N
Aminopeptidase N {ECO:0000313|EMBL:ADG99968.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_418_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36443..37615
DNA (1173bp) protein (391aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
Phosphoglucosamine mutase n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZSW8_BIFLJ
phosphomannomutase
L3_108_103G1_scaffold_418_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37638..38291
DNA (654bp) protein (218aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
def; peptide deformylase (EC:3.5.1.88)
Peptide deformylase n=1 Tax=Bifidobacterium longum subsp. longum 35B RepID=I3ARY7_BIFLN
L3_108_103G1_scaffold_418_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38288..39820
DNA (1533bp) protein (511aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AS02_BIFLN
DNA polymerase III {ECO:0000313|EMBL:KFI72017.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L3_108_103G1_scaffold_418_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40203..41327
DNA (1125bp) protein (375aa)
Peptide chain release factor 2 n=15 Tax=Bifidobacterium longum RepID=B3DTB9_BIFLD
prfB; peptide chain release factor 2
Peptide chain release factor 2 {ECO:0000256|HAMAP-Rule:MF_00094, ECO:0000256|SAAS:SAAS00020438}; Short=RF-2 {ECO:0000256|HAMAP-Rule:MF_00094};; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_108_103G1_scaffold_418_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41336..42505
DNA (1170bp) protein (390aa)
FtsE-like ATP binding protein involved in cell division n=2 Tax=Bifidobacterium longum RepID=F8ASC4_BIFLN
FtsE-like ATP binding protein {ECO:0000313|EMBL:BAP83132.1}; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
ftsE; FtsE-like ATP binding protein involved in cell division
L3_108_103G1_scaffold_418_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

42517..43440
DNA (924bp) protein (308aa)
Cell division protein FtsX n=4 Tax=Bifidobacterium RepID=E8MS47_BIFL1
cell division protein
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_108_103G1_scaffold_418_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

43460..44821
DNA (1362bp) protein (454aa)
CHAP domain protein n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GUT5_BIFLN
amidase
Amidase {ECO:0000313|EMBL:AIW43424.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_108_103G1_scaffold_418_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

44972..45448
DNA (477bp) protein (159aa)
SsrA-binding protein n=20 Tax=Bifidobacterium RepID=SSRP_BIFLD
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_108_103G1_scaffold_418_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

45611..46057
DNA (447bp) protein (149aa)
HisJ6 n=1 Tax=Bifidobacterium longum subsp. longum (strain BBMN68) RepID=E4QZY9_BIFLM
ABC transporter substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AIW43426.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_108_103G1_scaffold_418_28
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

46014..46229
DNA (216bp) protein (72aa)
Extracellular solute-binding protein, family 3 n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GUE3_BIFLS
Solute-binding protein of ABC transporter system
Extracellular solute-binding protein, family 3 {ECO:0000313|EMBL:ACJ53089.1}; Flags: Precursor;; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
Displaying 28 items

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