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L3_108_103G1_scaffold_536

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_103G1_scaffold_536_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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2..973
DNA (972bp) protein (324aa)
60 kDa chaperonin n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVL5_BIFLJ
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
groEL; chaperonin GroEL
L3_108_103G1_scaffold_536_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1161..1451)
DNA (291bp) protein (97aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DPK5_BIFLD
hypothetical protein
ESAT-6-like protein {ECO:0000256|RuleBase:RU362001}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_108_103G1_scaffold_536_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1481..2332
DNA (852bp) protein (284aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVL3_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH00919.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_536_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2280..3056
DNA (777bp) protein (259aa)
Two component transcriptional regulator, winged helix family n=2 Tax=Bifidobacterium longum RepID=D6ZVL2_BIFLJ
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADH00918.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_536_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3086..5077
DNA (1992bp) protein (664aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GPS2_BIFLS
two-component sensor kinase
L3_108_103G1_scaffold_536_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5147..5536
DNA (390bp) protein (130aa)
Cold shock protein n=3 Tax=Bifidobacterium longum RepID=B7GPS3_BIFLS
Cold-shock protein {ECO:0000313|EMBL:KFI73828.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
cold shock protein
L3_108_103G1_scaffold_536_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5545..6732
DNA (1188bp) protein (396aa)
PF11228 family protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3BHY2_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:KFI73829.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L3_108_103G1_scaffold_536_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6973..8613
DNA (1641bp) protein (547aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3BFD1_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH00914.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_536_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8653..9468
DNA (816bp) protein (272aa)
Zinc-ribbon domain protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3BFC7_BIFLN
Zinc-ribbon domain protein {ECO:0000313|EMBL:EIJ30070.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
hypothetical protein
L3_108_103G1_scaffold_536_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9574..10146
DNA (573bp) protein (191aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVK6_BIFLJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH00912.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_536_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10164..10811
DNA (648bp) protein (216aa)
Zinc-ribbon domain protein n=3 Tax=Bifidobacterium longum subsp. longum RepID=I3AY06_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH00911.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_536_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10902..12266
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum subsp. longum 44B RepID=I3BFC6_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIJ30069.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_108_103G1_scaffold_536_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12454..13419)
DNA (966bp) protein (322aa)
UspA domain protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVK4_BIFLJ
UspA domain-containing protein {ECO:0000313|EMBL:KFI73830.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
UspA domain-containing protein
L3_108_103G1_scaffold_536_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13569..16208
DNA (2640bp) protein (880aa)
ATPase AAA-2 domain protein n=8 Tax=Bifidobacterium RepID=D6ZVK3_BIFLJ
ATPase domain-containing protein {ECO:0000313|EMBL:KFI73831.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
ATPase domain-containing protein
L3_108_103G1_scaffold_536_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16386..17708)
DNA (1323bp) protein (441aa)
Cytosine deaminase {ECO:0000313|EMBL:ESV33987.1}; EC=3.5.4.1 {ECO:0000313|EMBL:ESV33987.1};; TaxID=1322347 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum E18.;"
Cytosine deaminase-like protein n=13 Tax=Bifidobacterium RepID=E4R111_BIFLM
cytosine deaminase
L3_108_103G1_scaffold_536_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17851..19353
DNA (1503bp) protein (501aa)
Purine catabolism regulatory protein-like family n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVK1_BIFLJ
purine catabolism regulatory protein-like protein
Purine catabolism regulatory protein-like family {ECO:0000313|EMBL:ADH00907.1}; TaxID=759350 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum (strain JDM301).;"
L3_108_103G1_scaffold_536_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19543..20919
DNA (1377bp) protein (459aa)
Proline/betaine transport protein n=3 Tax=Bifidobacterium RepID=E8MV27_BIFL1
proline/betaine transport protein
Proline/betaine transport protein {ECO:0000313|EMBL:BAJ71621.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_108_103G1_scaffold_536_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21005..21763
DNA (759bp) protein (253aa)
Amidase-like protein {ECO:0000313|EMBL:KFI73835.1}; EC=3.5.2.10 {ECO:0000313|EMBL:KFI73835.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Amidase-like protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZVJ8_BIFLJ
amidase-like protein
L3_108_103G1_scaffold_536_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21935..23728
DNA (1794bp) protein (598aa)
Metallophosphoesterase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GPS7_BIFLS
Metallophosphoesterase {ECO:0000313|EMBL:ACJ51807.1}; Flags: Precursor;; TaxID=391904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088; / JCM 1222 / NCTC 11817 / S12).;"
putative 5'-nucleotidase
L3_108_103G1_scaffold_536_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23933..25393)
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Bifidobacterium longum E18 RepID=V6XXK5_BIFLN
DNA repair protein {ECO:0000313|EMBL:KHD94527.1}; TaxID=1679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum.;"
hypothetical protein
L3_108_103G1_scaffold_536_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25493..26893
DNA (1401bp) protein (467aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1457183 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis EK3.;"
hisS; histidyl-tRNA synthetase (EC:6.1.1.21)
Histidine--tRNA ligase n=1 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=SYH_BIFLS
L3_108_103G1_scaffold_536_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


26929..27798
DNA (870bp) protein (290aa)
Aspartate--tRNA ligase {ECO:0000313|EMBL:EIJ29850.1}; EC=6.1.1.- {ECO:0000313|EMBL:EIJ29850.1};; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
Aspartate--tRNA ligase n=7 Tax=Bifidobacterium longum RepID=SYD_BIFLD
aspartyl-tRNA synthase
Displaying 22 items

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