ggKbase home page

L3_108_103G1_scaffold_828

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_103G1_scaffold_828_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20..466
DNA (447bp) protein (149aa)
pyridoxal phosphate synthase yaaD subunit (EC:4.-.-.-)
Pyridoxal 5'-phosphate synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824}; Short=PLP synthase subunit PdxS {ECO:0000256|HAMAP-Rule:MF_01824};; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01824};; Pdx1 {ECO:0000256|HAMAP-Rule:MF_01824}; TaxID=722911 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum F8.;"
Pyridoxal biosynthesis lyase PdxS n=3 Tax=Bifidobacterium RepID=PDXS_BIFLD
L3_108_103G1_scaffold_828_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

552..1190
DNA (639bp) protein (213aa)
Pyridoxal 5'-phosphate synthase subunit PdxT {ECO:0000256|HAMAP-Rule:MF_01615}; EC=4.3.3.6 {ECO:0000256|HAMAP-Rule:MF_01615};; Pdx2 {ECO:0000256|HAMAP-Rule:MF_01615}; Pyridoxal 5'-phosphate synthase glutaminase subunit {ECO:0000256|HAMAP-Rule:MF_01615}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Glutamine amidotransferase subunit PdxT n=3 Tax=Bifidobacterium longum RepID=B3DT79_BIFLD
SNO glutamine amidotransferase
L3_108_103G1_scaffold_828_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1248..2912
DNA (1665bp) protein (555aa)
Transcriptional regulator, GntR family {ECO:0000313|EMBL:KFI71901.1}; EC=2.6.1.39 {ECO:0000313|EMBL:KFI71901.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Putative transcriptional regulator n=1 Tax=Bifidobacterium longum subsp. longum KACC 91563 RepID=F8AS02_BIFLN
putative transcriptional regulator
L3_108_103G1_scaffold_828_4
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3266..4198
DNA (933bp) protein (311aa)
Asparaginase n=8 Tax=Bifidobacterium longum RepID=B3DT77_BIFLD
asparaginase
Asparaginase {ECO:0000313|EMBL:AIW43461.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
L3_108_103G1_scaffold_828_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4745..5932
DNA (1188bp) protein (396aa)
Di-and tricarboxylate transporter n=12 Tax=Bifidobacterium RepID=D6ZT19_BIFLJ
transport protein
Possible transport protein {ECO:0000313|EMBL:AAN24947.1}; TaxID=206672 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain NCC 2705).;"
L3_108_103G1_scaffold_828_6
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5957..6244)
DNA (288bp) protein (96aa)
Uncharacterized protein n=5 Tax=Bifidobacterium longum RepID=B7GUB1_BIFLS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEQ54181.1}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
L3_108_103G1_scaffold_828_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6371..8626)
DNA (2256bp) protein (752aa)
Alpha-L-arabinofuranosidase A-like protein {ECO:0000313|EMBL:KFI71896.1}; EC=3.2.1.55 {ECO:0000313|EMBL:KFI71896.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Alpha-L-arabinofuranosidase A-like protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZT21_BIFLJ
alpha-L-arabinofuranosidase A-like protein
L3_108_103G1_scaffold_828_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8778..9647
DNA (870bp) protein (290aa)
Transcriptional regulator n=3 Tax=Bifidobacterium longum RepID=B3DT71_BIFLD
RpiR family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ACD98340.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_108_103G1_scaffold_828_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9715..10923)
DNA (1209bp) protein (403aa)
ATP-dependent DNA helicase RecG C-terminal domain protein n=1 Tax=Bifidobacterium longum subsp. longum 2-2B RepID=I3B7Z9_BIFLN
Crp/Fnr family transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:KFI71894.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_108_103G1_scaffold_828_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11326..12108
DNA (783bp) protein (261aa)
ABC superfamily ATP binding cassette transporter, ABC protein n=4 Tax=Bifidobacterium longum subsp. longum RepID=D6ZT24_BIFLJ
salx-type abc antimicrobial peptide transport system atpase component
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EIJ22368.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_108_103G1_scaffold_828_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12105..13271
DNA (1167bp) protein (389aa)
Uncharacterized protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3ATG0_BIFLN
S-layer protein {ECO:0000313|EMBL:KFI71892.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
L3_108_103G1_scaffold_828_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13283..14845
DNA (1563bp) protein (521aa)
Efflux ABC transporter permease protein n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5NF06_9BIFI
Saly-type abc antimicrobial peptide transport system permease component {ECO:0000313|EMBL:KFI71891.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
saly-type abc antimicrobial peptide transport system permease component
L3_108_103G1_scaffold_828_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14829..17030)
DNA (2202bp) protein (734aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|SAAS:SAAS00085897};; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
Transketolase, pyridine binding domain protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3B812_BIFLN
1-deoxy-D-xylulose-5-phosphate synthase
L3_108_103G1_scaffold_828_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17204..18196
DNA (993bp) protein (331aa)
NADPH/quinone reductase {ECO:0000313|EMBL:KFI71889.1}; EC=1.1.1.1 {ECO:0000313|EMBL:KFI71889.1};; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
Alcohol dehydrogenase, zinc-binding domain protein n=1 Tax=Bifidobacterium longum subsp. longum (strain JDM301) RepID=D6ZT28_BIFLJ
alcohol dehydrogenase zinc-binding domain-containing protein
L3_108_103G1_scaffold_828_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18325..18444
DNA (120bp) protein (40aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
N5-carboxyaminoimidazole ribonucleotide mutase n=7 Tax=Bifidobacterium longum RepID=B7GUA2_BIFLS
N5-carboxyaminoimidazole ribonucleotide mutase
Displaying 15 items

View Taxonomy