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L3_108_103G1_scaffold_907

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_103G1_scaffold_907_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..1250)
DNA (1248bp) protein (416aa)
hydrogenases, Fe-only (EC:1.6.5.3)
Hydrogenase Fe-only n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN68_9FIRM
Hydrogenase Fe-only {ECO:0000313|EMBL:CCZ67095.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_108_103G1_scaffold_907_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1263..2192)
DNA (930bp) protein (310aa)
4Fe-4S binding domain protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TUY1_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:EDN76600.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
respiratory-chain NADH dehydrogenase domain 51 kDa subunit
L3_108_103G1_scaffold_907_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2176..2934)
DNA (759bp) protein (253aa)
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit (EC:1.6.5.3)
4Fe-4S binding domain protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TUY1_9FIRM
4Fe-4S binding domain protein {ECO:0000313|EMBL:CCZ67094.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_108_103G1_scaffold_907_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2940..3413)
DNA (474bp) protein (158aa)
NADH:ubiquinone oxidoreductase 24 kD subunit (EC:1.6.5.3)
Respiratory-chain NADH dehydrogenase 24 Kd subunit n=2 Tax=Clostridiales RepID=A7B647_RUMGN
Respiratory-chain NADH dehydrogenase 24 Kd subunit {ECO:0000313|EMBL:CCZ67093.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_108_103G1_scaffold_907_5
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3841..4215
DNA (375bp) protein (125aa)
LysR substrate binding domain protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B645_RUMGN
LysR substrate binding domain protein {ECO:0000313|EMBL:EDN76597.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
LysR family transcriptional regulator
L3_108_103G1_scaffold_907_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4349..5572)
DNA (1224bp) protein (408aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U7G4_9FIRM
L3_108_103G1_scaffold_907_7
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5948..6691)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67090.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uncharacterized protein involved in copper resistance
L3_108_103G1_scaffold_907_8
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6932..8389)
DNA (1458bp) protein (486aa)
PTS system, N-acetylglucosamine-specific IIBC component n=4 Tax=Clostridiales RepID=A7B642_RUMGN
PTS system protein {ECO:0000313|EMBL:EGN49634.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
L3_108_103G1_scaffold_907_9
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8486..8974)
DNA (489bp) protein (163aa)
PTS system, glucose subfamily, IIA component n=3 Tax=Lachnospiraceae RepID=A7B641_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD18096.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
PTS system, beta-glucosides-specific IIA component / PTS system, beta-glucosides-specific IIB component / PTS system, beta-glucosides-specific IIC component
L3_108_103G1_scaffold_907_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8989..9825)
DNA (837bp) protein (279aa)
Transcription antiterminator LicT n=4 Tax=Clostridiales RepID=A7B640_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49636.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
transcriptional antiterminator, BglG family
L3_108_103G1_scaffold_907_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10118..10849)
DNA (732bp) protein (244aa)
Glucosamine-6-phosphate deaminase {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029492}; EC=3.5.99.6 {ECO:0000256|HAMAP-Rule:MF_01241, ECO:0000256|SAAS:SAAS00029496};; GlcN6P deaminase {ECO:0000256|HAMAP-Rule:MF_01241}; Glucosamine-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_01241}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
glucosamine-6-phosphate isomerase (EC:3.5.99.6)
Glucosamine-6-phosphate deaminase n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U7F8_9FIRM
L3_108_103G1_scaffold_907_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10993..11733)
DNA (741bp) protein (247aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TN58_9FIRM
L3_108_103G1_scaffold_907_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11755..12579)
DNA (825bp) protein (275aa)
Energy-coupling factor transporter transmembrane protein EcfT n=3 Tax=Clostridiales RepID=F7JTZ9_9FIRM
Energy-coupling factor transporter transmembrane protein EcfT {ECO:0000256|HAMAP-Rule:MF_01461}; Short=ECF transporter T component EcfT {ECO:0000256|HAMAP-Rule:MF_01461};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_108_103G1_scaffold_907_14
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12576..13448)
DNA (873bp) protein (291aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TMW5_9FIRM
ABC-type cobalt transport system, ATPase component
L3_108_103G1_scaffold_907_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13433..14278)
DNA (846bp) protein (282aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
ABC transporter, ATP-binding protein n=4 Tax=Clostridiales RepID=A7B635_RUMGN
ABC-type cobalt transport system, ATPase component
L3_108_103G1_scaffold_907_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14250..15191)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U7F5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD18103.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_108_103G1_scaffold_907_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15369..15887)
DNA (519bp) protein (173aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Peptidyl-prolyl cis-trans isomerase (rotamase)-cyclophilin family (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=4 Tax=Clostridiales RepID=A7B632_RUMGN
L3_108_103G1_scaffold_907_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16111..17028
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TUW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67079.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_108_103G1_scaffold_907_19
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17042..17293
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TMW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67078.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
MerR family transcriptional regulator
L3_108_103G1_scaffold_907_20
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17414..18526
DNA (1113bp) protein (371aa)
ABC transporter, ATP-binding protein n=4 Tax=Clostridiales RepID=A7B629_RUMGN
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EDN76581.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_108_103G1_scaffold_907_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18608..19531
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U7F2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67076.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_108_103G1_scaffold_907_22
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19524..20021
DNA (498bp) protein (166aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B627_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49648.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_108_103G1_scaffold_907_23
unknown

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20315..20503
DNA (189bp) protein (63aa)

This feature has no annotations

Displaying 23 items

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