ggKbase home page

L3_108_103G1_scaffold_377

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_103G1_scaffold_377_1
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(212..673)
DNA (462bp) protein (154aa)
Antioxidant, AhpC/TSA family {ECO:0000313|EMBL:EDP12159.1}; EC=1.11.1.15 {ECO:0000313|EMBL:EDP12159.1};; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
Antioxidant, AhpC/TSA family n=2 Tax=Firmicutes RepID=A8R8B8_9FIRM
bcp; thiol peroxidase
L3_108_103G1_scaffold_377_2
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

730..1662
DNA (933bp) protein (311aa)
Cof-like hydrolase n=2 Tax=Firmicutes RepID=R7G6V8_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:CDE23159.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
HAD-superfamily hydrolase
L3_108_103G1_scaffold_377_3
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1704..2711
DNA (1008bp) protein (336aa)
Transcriptional regulator LacI family n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G7Q2_9FIRM
Transcriptional regulator LacI family {ECO:0000313|EMBL:CDE23160.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
helix-turn-helix family protein
L3_108_103G1_scaffold_377_4
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2812..3189
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G889_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE23161.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
hypothetical protein
L3_108_103G1_scaffold_377_5
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

3186..3686
DNA (501bp) protein (167aa)
Heptaprenyl diphosphate synthase component I n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8C2_9FIRM
Heptaprenyl diphosphate synthase component I {ECO:0000313|EMBL:EDP12163.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
Predicted membrane protein
L3_108_103G1_scaffold_377_6
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

3704..3964
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8C4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDP12164.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
hypothetical protein
L3_108_103G1_scaffold_377_7
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

4007..4543
DNA (537bp) protein (179aa)
DUTP diphosphatase {ECO:0000313|EMBL:EDP12165.1}; EC=3.6.1.23 {ECO:0000313|EMBL:EDP12165.1};; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
DUTP diphosphatase n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8C5_9FIRM
L3_108_103G1_scaffold_377_8
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4573..4797
DNA (225bp) protein (75aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=A8R8C6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE23165.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
L3_108_103G1_scaffold_377_9
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4830..5123
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G894_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE23166.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
L3_108_103G1_scaffold_377_10
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5386..6024)
DNA (639bp) protein (213aa)
KDPG and KHG aldolase n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7GB29_9FIRM
KDPG and KHG aldolase {ECO:0000313|EMBL:CDE23167.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
kdgA; 2-keto-3-deoxy-6-phospho-gluconate aldolase
L3_108_103G1_scaffold_377_11
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6317..6799
DNA (483bp) protein (161aa)
PTS system sorbose subfamily IIB component n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G8Q8_9FIRM
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:CDE23168.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
PTS system sorbose subfamily transporter subunit IIB
L3_108_103G1_scaffold_377_12
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6826..7569
DNA (744bp) protein (248aa)
PTS system sorbose-specific iic component n=2 Tax=Firmicutes RepID=A8R8D1_9FIRM
PTS system sorbose-specific iic component {ECO:0000313|EMBL:CDE23169.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
PTS sorbose-specific transporter subunit IIC
L3_108_103G1_scaffold_377_13
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7569..8432
DNA (864bp) protein (288aa)
PTS system mannose/fructose/sorbose family IID component n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G7R3_9FIRM
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:CDE23170.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
Man family PTS system transporter subunit IID
L3_108_103G1_scaffold_377_14
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8516..9448
DNA (933bp) protein (311aa)
4-phosphoerythronate dehydrogenase n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G8A1_9FIRM
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:CDE23171.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein
L3_108_103G1_scaffold_377_15
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

9456..10058
DNA (603bp) protein (201aa)
SIS domain protein n=2 Tax=Firmicutes RepID=A8R8D4_9FIRM
SIS domain protein {ECO:0000313|EMBL:EDP12174.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
sugar-phosphate isomerase
L3_108_103G1_scaffold_377_16
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10076..10495
DNA (420bp) protein (140aa)
PTS system fructose IIA component n=2 Tax=Firmicutes RepID=A8R8D5_9FIRM
PTS system fructose IIA component {ECO:0000313|EMBL:CDE23173.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
PTS system fructose subfamily transporter subunit IIA
L3_108_103G1_scaffold_377_17
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10571..11653
DNA (1083bp) protein (361aa)
Transcriptional regulator, Fis family n=2 Tax=Firmicutes RepID=A8R8D6_9FIRM
Transcriptional regulator Fis family {ECO:0000313|EMBL:CDE23174.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
putative Sugar diacid utilization regulator
L3_108_103G1_scaffold_377_18
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11646..12125
DNA (480bp) protein (160aa)
PTS system sorbose subfamily IIB component n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8D7_9FIRM
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EDP12177.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
putative PTS system IIB component
L3_108_103G1_scaffold_377_19
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12138..13028
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|SAAS:SAAS00086366}; EC=4.-.-.- {ECO:0000256|SAAS:SAAS00278209};; EC=4.3.3.7 {ECO:0000256|SAAS:SAAS00086421};; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
Dihydrodipicolinate synthase n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G8A6_9FIRM
dihydrodipicolinate synthetase
L3_108_103G1_scaffold_377_20
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13344..13820
DNA (477bp) protein (159aa)
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
Lipoprotein signal peptidase n=2 Tax=Firmicutes RepID=R7GB40_9FIRM
lipoprotein signal peptidase
L3_108_103G1_scaffold_377_21
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13808..14719
DNA (912bp) protein (304aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
Pseudouridine synthase n=2 Tax=Firmicutes RepID=A8R8E0_9FIRM
pseudouridine synthase
L3_108_103G1_scaffold_377_22
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14735..15967
DNA (1233bp) protein (411aa)
Peptidase, S54 family {ECO:0000313|EMBL:EDP12181.1}; EC=3.4.21.- {ECO:0000313|EMBL:EDP12181.1};; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
Peptidase, S54 family n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8E1_9FIRM
peptidase, S54 (rhomboid) family
L3_108_103G1_scaffold_377_23
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15978..16463
DNA (486bp) protein (162aa)
Deoxycytidylate deaminase (EC:3.5.4.12)
Cytidine and deoxycytidylate deaminase zinc-binding region n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G7S5_9FIRM
Cytidine and deoxycytidylate deaminase zinc-binding region {ECO:0000313|EMBL:CDE23180.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
L3_108_103G1_scaffold_377_24
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16606..18057
DNA (1452bp) protein (484aa)
Uncharacterized protein n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G8A9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE23181.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
hypothetical protein
L3_108_103G1_scaffold_377_25
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18159..19025)
DNA (867bp) protein (289aa)
Ribonuclease HIII {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088219}; Short=RNase HIII {ECO:0000256|HAMAP-Rule:MF_00053};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00053, ECO:0000256|SAAS:SAAS00088223};; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
Ribonuclease HIII n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7GB46_9FIRM
rnhC; ribonuclease HIII
L3_108_103G1_scaffold_377_26
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19149..19799
DNA (651bp) protein (217aa)
CvpA family protein n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G8S6_9FIRM
CvpA family protein {ECO:0000313|EMBL:CDE23183.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
putative colicin V production protein
L3_108_103G1_scaffold_377_27
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19796..22111
DNA (2316bp) protein (772aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
Endonuclease MutS2 n=1 Tax=Eubacterium dolichum CAG:375 RepID=R7G6Y3_9FIRM
mutS2; DNA mismatch repair protein MutS2
L3_108_103G1_scaffold_377_28
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

22114..23892
DNA (1779bp) protein (593aa)
UvrABC system protein C n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8E7_9FIRM
UvrABC system protein C {ECO:0000256|HAMAP-Rule:MF_00203, ECO:0000256|SAAS:SAAS00088139}; Short=Protein UvrC {ECO:0000256|HAMAP-Rule:MF_00203};; Excinuclease ABC subunit C {ECO:0000256|HAMAP-Rule:MF_00203}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
Excinuclease ABC subunit C
L3_108_103G1_scaffold_377_29
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23975..24136
DNA (162bp) protein (54aa)
Spore germination protein GerE n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R8E8_9FIRM
Spore germination protein GerE {ECO:0000313|EMBL:CDE23186.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
LuxR family transcriptional regulator
L3_108_103G1_scaffold_377_30
Eubacterium dolichum CAG:375, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24210..24584
DNA (375bp) protein (125aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=A8R8E9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE23187.1}; TaxID=1263076 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium dolichum CAG:375.;"
Displaying items 1-30 of 42 in total

View Taxonomy