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L3_108_365G1_scaffold_3482

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_365G1_scaffold_3482_1
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(376..1125)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL70481.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
N-acetyltransferase GCN5
L3_108_365G1_scaffold_3482_2
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1205..1846)
DNA (642bp) protein (214aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF38380.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_108_365G1_scaffold_3482_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1896..2717)
DNA (822bp) protein (274aa)
SrtB family sortase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT85_9FIRM
SrtB family sortase {ECO:0000313|EMBL:EHL70479.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
sortase B. Cysteine peptidase. MEROPS family C60B
L3_108_365G1_scaffold_3482_4
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2880..3731)
DNA (852bp) protein (284aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT84_9FIRM
AraC family transcriptional regulator {ECO:0000313|EMBL:KJF38381.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
AraC family transcriptional regulator
L3_108_365G1_scaffold_3482_5
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3784..4053)
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL70477.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_3482_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4173..4814
DNA (642bp) protein (214aa)
NAD(P)H-hydrate epimerase {ECO:0000256|HAMAP-Rule:MF_01966}; EC=5.1.99.6 {ECO:0000256|HAMAP-Rule:MF_01966};; NAD(P)HX epimerase {ECO:0000256|HAMAP-Rule:MF_01966}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
NAD(P)H-hydrate epimerase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT82_9FIRM
yjeF N-terminal region
L3_108_365G1_scaffold_3482_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4914..6257
DNA (1344bp) protein (448aa)
MATE efflux family protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT81_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EHL70475.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
putative efflux protein, MATE family
L3_108_365G1_scaffold_3482_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6500..6916)
DNA (417bp) protein (139aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL70474.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Protein of unknown function (DUF2992).
L3_108_365G1_scaffold_3482_9
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7078..7875)
DNA (798bp) protein (266aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT79_9FIRM
AraC family transcriptional regulator {ECO:0000313|EMBL:KJF38384.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
putative bacterial transcription activator
L3_108_365G1_scaffold_3482_10
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8155..9480)
DNA (1326bp) protein (442aa)
MATE efflux family protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT78_9FIRM
Multidrug transporter MatE {ECO:0000313|EMBL:KJF38385.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
MATE efflux family protein
L3_108_365G1_scaffold_3482_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9669..10706)
DNA (1038bp) protein (346aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT77_9FIRM
NAD-dependent dehydratase {ECO:0000313|EMBL:KJF38386.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
mRNA-binding protein
L3_108_365G1_scaffold_3482_12
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11230..12783)
DNA (1554bp) protein (518aa)
Resolvase, N-terminal domain protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0N9D7_CLOSV
Recombinase {ECO:0000313|EMBL:KJF38387.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_108_365G1_scaffold_3482_13
unknown

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comp(12815..12952)
DNA (138bp) protein (46aa)

This feature has no annotations

L3_108_365G1_scaffold_3482_14
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13151..13621)
DNA (471bp) protein (157aa)
Endoribonuclease L-PSP n=2 Tax=Clostridium RepID=D3AA54_9CLOT
Endoribonuclease L-PSP {ECO:0000313|EMBL:KJF38388.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
endoribonuclease L-PSP
L3_108_365G1_scaffold_3482_15
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13627..15228)
DNA (1602bp) protein (534aa)
N-acyl-D-aspartate deacylase (EC:3.5.1.83)
N-acyl-D-aspartate deacylase n=1 Tax=Treponema primitia (strain ATCC BAA-887 / DSM 12427 / ZAS-2) RepID=F5YGZ4_TREPZ
Uncharacterized protein {ECO:0000313|EMBL:KJF38390.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_108_365G1_scaffold_3482_16
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15242..16363)
DNA (1122bp) protein (374aa)
Alanine racemase domain protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R763_CLOSW
Alanine racemase {ECO:0000313|EMBL:KJF38391.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
alanine racemase
L3_108_365G1_scaffold_3482_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16386..16577)
DNA (192bp) protein (64aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RT97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL70491.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
dihydrodipicolinate synthase/N-acetylneuraminate lyase
Displaying 17 items

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