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L3_108_365G1_scaffold_1082

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_365G1_scaffold_1082_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..95
DNA (93bp) protein (31aa)
Helix-turn-helix n=20 Tax=root RepID=D4ML35_9FIRM
Helix-turn-helix.
Uncharacterized protein {ECO:0000313|EMBL:EGA92924.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L3_108_365G1_scaffold_1082_2
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

336..665
DNA (330bp) protein (110aa)
Bacterial mobilization protein MobC n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWB0_9FIRM
Bacterial mobilization protein MobC {ECO:0000313|EMBL:EDM99767.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Bacterial mobilisation protein (MobC).
L3_108_365G1_scaffold_1082_3
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

626..1975
DNA (1350bp) protein (450aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWA9_9FIRM
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EDM99766.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
Relaxase/Mobilisation nuclease domain.
L3_108_365G1_scaffold_1082_4
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2068..2406
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99765.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_108_365G1_scaffold_1082_5
Clostridium botulinum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2554..3546
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Clostridium botulinum (strain Loch Maree / Type A3) RepID=B1KV92_CLOBM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA54532.1}; TaxID=498214 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium botulinum (strain Loch Maree / Type A3).;"
L3_108_365G1_scaffold_1082_6
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3811..3987)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NW98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99755.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
hypothetical protein
L3_108_365G1_scaffold_1082_7
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3984..5843)
DNA (1860bp) protein (620aa)
Antirestriction protein ArdA n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NW97_9FIRM
Antirestriction protein ArdA {ECO:0000313|EMBL:EDM99754.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
antirestriction protein (ArdA)
L3_108_365G1_scaffold_1082_8
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5856..6362)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LS13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61308.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_108_365G1_scaffold_1082_9
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6379..8481)
DNA (2103bp) protein (701aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
DNA topoisomerase III (EC:5.99.1.2)
DNA topoisomerase n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LRC0_9FIRM
L3_108_365G1_scaffold_1082_10
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8478..9206)
DNA (729bp) protein (243aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LSN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61311.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_108_365G1_scaffold_1082_11

Not on your lists

comp(9196..9486)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SLX8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC54835.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_108_365G1_scaffold_1082_12
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9473..10207)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LS18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61313.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
Phosphoadenosine phosphosulfate reductase family.
L3_108_365G1_scaffold_1082_13
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10229..12118)
DNA (1890bp) protein (630aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LRA3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61314.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
DNA-repair protein
L3_108_365G1_scaffold_1082_14
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12115..12273)
DNA (159bp) protein (53aa)
Site-specific DNA methylase (EC:2.1.1.37)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LRC6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61315.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
L3_108_365G1_scaffold_1082_15
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12270..12950)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Clostridium sp. MSTE9 RepID=J1H3W2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EJF40190.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
L3_108_365G1_scaffold_1082_16

Not on your lists

comp(13130..13750)
DNA (621bp) protein (207aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1V3K1_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC78446.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_108_365G1_scaffold_1082_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13755..14516)
DNA (762bp) protein (254aa)
Phage antirepressor n=1 Tax=Clostridium clostridioforme CM201 RepID=N9XEM8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGJ46331.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Prophage antirepressor
L3_108_365G1_scaffold_1082_18
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14509..16932)
DNA (2424bp) protein (808aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14673 RepID=E9SUF9_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI99534.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
Type IV secretory pathway, VirB4 component
L3_108_365G1_scaffold_1082_19

Not on your lists

comp(16898..17284)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1S4T9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC48760.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_108_365G1_scaffold_1082_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17289..18185)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZLQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ05884.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L3_108_365G1_scaffold_1082_21
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18199..19065)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LRA8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61319.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_108_365G1_scaffold_1082_22
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19133..19354)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LS21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS61318.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
hypothetical protein
L3_108_365G1_scaffold_1082_23
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(19357..21219)
DNA (1863bp) protein (621aa)
TraG/TraD family protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9Y5Q5_9FIRM
TraG/TraD family protein {ECO:0000313|EMBL:EEF68713.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
Type IV secretory pathway, VirD4 components
L3_108_365G1_scaffold_1082_24

Not on your lists

comp(21216..21704)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1UKT9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC78750.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_108_365G1_scaffold_1082_25
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21711..22610)
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Butyricicoccus pullicaecorum 1.2 RepID=R8W217_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOQ38769.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
hypothetical protein
L3_108_365G1_scaffold_1082_26
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22986..24194)
DNA (1209bp) protein (403aa)
aminotransferase (EC:4.4.1.14)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RUJ9_9FIRM
Aspartate aminotransferase {ECO:0000313|EMBL:KJF38805.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_108_365G1_scaffold_1082_27
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24391..24873)
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RUK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL68403.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Transcriptional regulators
L3_108_365G1_scaffold_1082_28
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24937..25599)
DNA (663bp) protein (221aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RUK1_9FIRM
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:KJF38803.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
cAMP-binding proteins-catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases
L3_108_365G1_scaffold_1082_29
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25808..27862
DNA (2055bp) protein (685aa)
formate acetyltransferase (EC:2.3.1.54)
Formate acetyltransferase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RUK2_9FIRM
Formate acetyltransferase {ECO:0000313|EMBL:EHL68405.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_108_365G1_scaffold_1082_30
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27879..28079
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RUK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL68406.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Displaying items 1-30 of 59 in total

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