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L3_108_365G1_scaffold_1319

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_365G1_scaffold_1319_1
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(169..474)
DNA (306bp) protein (102aa)
Predicted protein n=11 Tax=Firmicutes RepID=C9CCX8_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:EOQ38709.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
L3_108_365G1_scaffold_1319_2
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(560..1783)
DNA (1224bp) protein (408aa)
Uncharacterized protein n=2 Tax=root RepID=F4XGN1_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:ERI81598.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Site-specific recombinase XerD
L3_108_365G1_scaffold_1319_3
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2072..2941
DNA (870bp) protein (290aa)
Predicted protein n=11 Tax=Bacteria RepID=C9CCV9_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:ERI76431.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_108_365G1_scaffold_1319_4
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2961..4001
DNA (1041bp) protein (347aa)
Uncharacterized protein n=17 Tax=root RepID=N9XFD1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI76430.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_108_365G1_scaffold_1319_5
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4011..4265
DNA (255bp) protein (85aa)
Predicted protein n=9 Tax=Bacteria RepID=C9CCV7_ENTFC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI76429.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_108_365G1_scaffold_1319_6
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4282..4545
DNA (264bp) protein (88aa)
Uncharacterized protein n=13 Tax=root RepID=N9VV56_9CLOT
Protein of unknown function (DUF1292).
Uncharacterized protein {ECO:0000313|EMBL:ENZ19599.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_108_365G1_scaffold_1319_7
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4595..5332
DNA (738bp) protein (246aa)
Zn-dependent protease with chaperone function n=18 Tax=root RepID=D4K4P9_9FIRM
Zn-dependent protease with chaperone function
Peptidase, M48 family {ECO:0000313|EMBL:ERI76427.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_108_365G1_scaffold_1319_8
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5393..7249)
DNA (1857bp) protein (619aa)
DNA topoisomerase III, bacteria and conjugative plasmid (EC:5.99.1.2)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
DNA topoisomerase n=14 Tax=root RepID=D4K4Q6_9FIRM
L3_108_365G1_scaffold_1319_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7427..8659)
DNA (1233bp) protein (411aa)
Uncharacterized protein n=18 Tax=Bacteria RepID=E8LH20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45545.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Predicted ATPase (AAA+ superfamily)
L3_108_365G1_scaffold_1319_10

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comp(8811..9494)
DNA (684bp) protein (228aa)
Uncharacterized protein n=19 Tax=root RepID=T3XYQ5_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGW28701.1}; TaxID=1348854 species="Bacteria; environmental samples.;" source="uncultured bacterium EB1.;"
L3_108_365G1_scaffold_1319_11
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9484..9741)
DNA (258bp) protein (86aa)
Predicted protein n=10 Tax=root RepID=C9CCU7_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:ENZ19138.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_108_365G1_scaffold_1319_12
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9756..10514)
DNA (759bp) protein (253aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=18 Tax=root RepID=D4K4Q9_9FIRM
Cell wall-associated hydrolases (invasion-associated proteins)
Uncharacterized protein {ECO:0000313|EMBL:ENZ19139.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_108_365G1_scaffold_1319_13
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10511..11491)
DNA (981bp) protein (327aa)
Cell wall-associated hydrolases (Invasion-associated proteins) n=18 Tax=root RepID=D4K4Q9_9FIRM
Cell wall-associated hydrolases (invasion-associated proteins)
NlpC/P60 family protein {ECO:0000313|EMBL:ERI76412.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_108_365G1_scaffold_1319_14
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11495..13882)
DNA (2388bp) protein (796aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=T5RY51_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEV42411.1}; TaxID=565656 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium 1,230,933.;"
TraE protein
L3_108_365G1_scaffold_1319_15
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13842..14276)
DNA (435bp) protein (145aa)
Uncharacterized protein n=13 Tax=Firmicutes RepID=E8LH15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENZ19141.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_108_365G1_scaffold_1319_16
Enterococcus faecium, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(14294..15160)
DNA (867bp) protein (289aa)
Uncharacterized protein n=15 Tax=root RepID=E8LH14_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EEV42409.1}; TaxID=565656 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecium 1,230,933.;"
hypothetical protein
L3_108_365G1_scaffold_1319_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15186..15401)
DNA (216bp) protein (72aa)
Uncharacterized protein n=14 Tax=Firmicutes RepID=C0FN71_9FIRM
conjugative transfer protein
Uncharacterized protein {ECO:0000313|EMBL:CBK98503.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_108_365G1_scaffold_1319_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15485..15877)
DNA (393bp) protein (131aa)
Helix-turn-helix n=16 Tax=Firmicutes RepID=D4K4R1_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBK98504.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_108_365G1_scaffold_1319_19
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15883..16203)
DNA (321bp) protein (107aa)
Predicted protein n=11 Tax=root RepID=C9CCS2_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:ERI76406.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_108_365G1_scaffold_1319_20
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16216..17967)
DNA (1752bp) protein (584aa)
Type IV secretory pathway, VirD4 components n=16 Tax=root RepID=D4K4R2_9FIRM
Type IV secretory pathway, VirD4 components
TraG/TraD family protein {ECO:0000313|EMBL:ERI76405.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_108_365G1_scaffold_1319_21
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17967..18449)
DNA (483bp) protein (161aa)
Uncharacterized protein n=19 Tax=root RepID=E8LH07_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENZ19147.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_108_365G1_scaffold_1319_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18486..18797)
DNA (312bp) protein (104aa)
Uncharacterized protein n=13 Tax=root RepID=E8LH06_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGJ45557.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_108_365G1_scaffold_1319_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18808..19449)
DNA (642bp) protein (214aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=E8LH05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45558.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_108_365G1_scaffold_1319_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19504..20031)
DNA (528bp) protein (176aa)
Predicted protein n=16 Tax=Firmicutes RepID=C9CCR7_ENTFC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ENZ19150.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
L3_108_365G1_scaffold_1319_25
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20040..20966)
DNA (927bp) protein (309aa)
ParB-like partition proteins n=17 Tax=Firmicutes RepID=D4K4R6_9FIRM
ParB-like partition proteins
ParB-like protein {ECO:0000313|EMBL:ERI76400.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_108_365G1_scaffold_1319_26
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20923..21750)
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CAX1_9FIRM
Putative sporulation initiation inhibitor protein Soj {ECO:0000313|EMBL:ERI76399.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ATPases involved in chromosome partitioning
L3_108_365G1_scaffold_1319_27
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21791..22621)
DNA (831bp) protein (277aa)
Replication initiator protein A domain protein n=15 Tax=Firmicutes RepID=E8LH01_9FIRM
Replication initiator protein A {ECO:0000313|EMBL:ERI76398.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_108_365G1_scaffold_1319_28

Not on your lists

comp(22618..22833)
DNA (216bp) protein (72aa)
Predicted protein n=3 Tax=root RepID=C9CCR3_ENTFC
Uncharacterized protein {ECO:0000313|EMBL:EKC58882.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_108_365G1_scaffold_1319_29
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23909..24997
DNA (1089bp) protein (363aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=A8RVY1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP15491.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
L3_108_365G1_scaffold_1319_30
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24942..25307
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Clostridium bolteae RepID=R0AKT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EDP15492.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
hypothetical protein
Displaying items 1-30 of 34 in total

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