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L3_108_365G1_scaffold_1405

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Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_365G1_scaffold_1405_1
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(155..2014)
DNA (1860bp) protein (620aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Phosphoenolpyruvate carboxykinase (GTP) (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PCY8_9FIRM
L3_108_365G1_scaffold_1405_2
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2304..4535)
DNA (2232bp) protein (744aa)
D-galactosyl-beta-1-3-N-acetyl-D-hexosamine phosphorylase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP61_9FIRM
D-galactosyl-beta-1-3-N-acetyl-D-hexosamine phosphorylase {ECO:0000313|EMBL:KJF39395.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
conserved hypothetical protein TIGR02336
L3_108_365G1_scaffold_1405_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4568..5467)
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75104.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_108_365G1_scaffold_1405_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5480..6373)
DNA (894bp) protein (298aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75103.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
binding-protein-dependent transport system inner membrane protein
L3_108_365G1_scaffold_1405_5
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6498..7859)
DNA (1362bp) protein (454aa)
Carbohydrate ABC transporter substrate-binding protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP57_9FIRM
Carbohydrate ABC transporter substrate-binding protein {ECO:0000313|EMBL:EHL75102.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_108_365G1_scaffold_1405_6
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8236..9096
DNA (861bp) protein (287aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP56_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75101.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
transcriptional regulator, AraC family
L3_108_365G1_scaffold_1405_7
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9195..10100
DNA (906bp) protein (302aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP55_9FIRM
AraC family transcriptional regulator {ECO:0000313|EMBL:KJF39401.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
AraC family transcriptional regulator
L3_108_365G1_scaffold_1405_8
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10296..11315
DNA (1020bp) protein (340aa)
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP54_9FIRM
UDP-glucose 4-epimerase {ECO:0000313|EMBL:KJF39402.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_108_365G1_scaffold_1405_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11367..11642
DNA (276bp) protein (92aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75098.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
dTDP-glucose pyrophosphorylase
L3_108_365G1_scaffold_1405_10
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11639..12214
DNA (576bp) protein (192aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75098.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_1405_11
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12217..13329
DNA (1113bp) protein (371aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP52_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75097.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
aminoglycoside phosphotransferase
L3_108_365G1_scaffold_1405_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13412..13951)
DNA (540bp) protein (180aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP51_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75096.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
nicotinamidase/pyrazinamidase
L3_108_365G1_scaffold_1405_13
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13955..15046)
DNA (1092bp) protein (364aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP50_9FIRM
L3_108_365G1_scaffold_1405_14
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15338..15766
DNA (429bp) protein (143aa)
50S ribosomal protein L13 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP49_9FIRM
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
50S ribosomal protein L13
L3_108_365G1_scaffold_1405_15
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


15782..16180
DNA (399bp) protein (133aa)
30S ribosomal protein S9 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RP48_9FIRM
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
SSU ribosomal protein S9P
L3_108_365G1_scaffold_1405_16
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16340..17041
DNA (702bp) protein (234aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75022.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_1405_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17055..18596)
DNA (1542bp) protein (514aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNX5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75020.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_1405_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18589..19155)
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNX4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75019.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_1405_19
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19175..19648)
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75018.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_1405_20
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19632..20186)
DNA (555bp) protein (185aa)
RNA polymerase sigma factor n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNX2_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
RNA polymerase ECF subfamily sigma factor
L3_108_365G1_scaffold_1405_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20370..20861)
DNA (492bp) protein (164aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNX1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75016.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted membrane protein
L3_108_365G1_scaffold_1405_22
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21069..23000
DNA (1932bp) protein (644aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF39412.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_108_365G1_scaffold_1405_23
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23128..25302)
DNA (2175bp) protein (725aa)
Alanine racemase {ECO:0000256|RuleBase:RU004247, ECO:0000256|SAAS:SAAS00021659}; EC=5.1.1.1 {ECO:0000256|RuleBase:RU004247, ECO:0000256|SAAS:SAAS00021659};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Alanine racemase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW9_9FIRM
alanine racemase
L3_108_365G1_scaffold_1405_24
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25299..26051)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75013.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
peptidase M15
L3_108_365G1_scaffold_1405_25
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26048..27091)
DNA (1044bp) protein (348aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
D-alanine--D-alanine ligase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW7_9FIRM
D-alanine--D-alanine ligase
L3_108_365G1_scaffold_1405_26
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27327..27749
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75011.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
MarR family transcriptional regulator
L3_108_365G1_scaffold_1405_27
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27902..29647
DNA (1746bp) protein (582aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW5_9FIRM
ABC transporter {ECO:0000313|EMBL:KJF39416.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
ABC-type multidrug transport system, ATPase and permease components
L3_108_365G1_scaffold_1405_28
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29625..31544
DNA (1920bp) protein (640aa)
xenobiotic-transporting ATPase (EC:3.6.3.44)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75009.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_108_365G1_scaffold_1405_29
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31614..32237)
DNA (624bp) protein (208aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL75008.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_1405_30
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32681..33151
DNA (471bp) protein (157aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RNW2_9FIRM
MFS transporter {ECO:0000313|EMBL:KJF39418.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
5-nitroimidazole antibiotic resistance protein
Displaying items 1-30 of 56 in total

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