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L3_108_365G1_scaffold_1511

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_365G1_scaffold_1511_1
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(54..881)
DNA (828bp) protein (276aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67659.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted transcriptional regulators
L3_108_365G1_scaffold_1511_2
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1035..2354)
DNA (1320bp) protein (440aa)
MATE efflux family protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVE5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF39796.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
MATE efflux family protein
L3_108_365G1_scaffold_1511_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2647..3654)
DNA (1008bp) protein (336aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVE4_9FIRM
L3_108_365G1_scaffold_1511_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3674..4204)
DNA (531bp) protein (177aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVE3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67656.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_108_365G1_scaffold_1511_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4240..4509)
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVE2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF39793.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_108_365G1_scaffold_1511_6
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4524..5306)
DNA (783bp) protein (261aa)
trans-aconitate 2-methyltransferase (EC:2.1.1.144)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVE1_9FIRM
Trans-aconitate methyltransferase {ECO:0000313|EMBL:KJF39792.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
L3_108_365G1_scaffold_1511_7
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5341..5835)
DNA (495bp) protein (165aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVE0_9FIRM
Phosphotransferase {ECO:0000313|EMBL:KJF39791.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_108_365G1_scaffold_1511_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5904..6374)
DNA (471bp) protein (157aa)
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVD9_9FIRM
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EHL67652.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ribosomal-protein-alanine acetyltransferase
L3_108_365G1_scaffold_1511_9
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6447..8981)
DNA (2535bp) protein (845aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVD8_9FIRM
L3_108_365G1_scaffold_1511_10
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9180..10133
DNA (954bp) protein (318aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
tRNA-dihydrouridine synthase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVD7_9FIRM
tRNA-U20-dihydrouridine synthase
L3_108_365G1_scaffold_1511_11
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10143..10748)
DNA (606bp) protein (202aa)
Predicted hydrolases of HD superfamily (EC:3.1.3.5)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVD6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67649.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_108_365G1_scaffold_1511_12
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10848..13298
DNA (2451bp) protein (817aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF39788.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Bacterial membrane protein YfhO.
L3_108_365G1_scaffold_1511_13
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13300..15462
DNA (2163bp) protein (721aa)
Competence protein ComEA helix-hairpin-helix repeat region n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVD4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF39787.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Tex-like protein
L3_108_365G1_scaffold_1511_14
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15483..15656
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67646.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_1511_15
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15707..17128
DNA (1422bp) protein (474aa)
MATE efflux family protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVD2_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EHL67645.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
MATE efflux family protein
L3_108_365G1_scaffold_1511_16
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17272..17808
DNA (537bp) protein (179aa)
RNA polymerase sigma-H factor n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVD1_9FIRM
RNA polymerase sigma-H factor {ECO:0000313|EMBL:EHL67644.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
RNA polymerase factor sigma-70
L3_108_365G1_scaffold_1511_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17943..18221
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RVD0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL67643.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
Displaying 17 items

View Taxonomy