ggKbase home page

L3_108_365G1_scaffold_197

Search features with annotation key words

Displaying items 1-30 of 407 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_365G1_scaffold_197_1
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..4056)
DNA (4056bp) protein (1352aa)
Cna protein B-type domain protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNT7_9CLOT
Cna protein B-type domain protein {ECO:0000313|EMBL:EEA82307.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Cna protein B-type domain.
L3_108_365G1_scaffold_197_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4190..5512)
DNA (1323bp) protein (441aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23111.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
CHC2 zinc finger.
L3_108_365G1_scaffold_197_3
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5595..7007)
DNA (1413bp) protein (471aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2PP89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK52355.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
ERF superfamily.
L3_108_365G1_scaffold_197_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7031..8011)
DNA (981bp) protein (327aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNU2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23113.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_108_365G1_scaffold_197_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8040..8588)
DNA (549bp) protein (183aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNU3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23114.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_108_365G1_scaffold_197_6
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8600..9052)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNU4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82314.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_108_365G1_scaffold_197_7
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9094..10356)
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNU5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA82315.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_108_365G1_scaffold_197_8
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10316..10921)
DNA (606bp) protein (202aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNU6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23117.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_108_365G1_scaffold_197_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11270..12061)
DNA (792bp) protein (264aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PFL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23118.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_108_365G1_scaffold_197_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12025..12876)
DNA (852bp) protein (284aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PFL1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23118.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_108_365G1_scaffold_197_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13028..14179)
DNA (1152bp) protein (384aa)
2-hydroxyglutaryl-CoA dehydratase, D-component n=2 Tax=Clostridium RepID=B6FNU9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23119.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
2-hydroxyacyl-CoA dehydratase subunit beta
L3_108_365G1_scaffold_197_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14392..15345
DNA (954bp) protein (318aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Glycosyltransferase, group 4 family n=2 Tax=Clostridium RepID=B6FNV1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23120.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_108_365G1_scaffold_197_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15394..16668)
DNA (1275bp) protein (425aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PXE0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23121.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
cytochrome c biogenesis protein transmembrane region
L3_108_365G1_scaffold_197_14
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16675..17976)
DNA (1302bp) protein (434aa)
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRU8_9CLOT
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein {ECO:0000313|EMBL:EEA81232.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Na+/H+-dicarboxylate symporters
L3_108_365G1_scaffold_197_15
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17969..18838)
DNA (870bp) protein (290aa)
dTDP-4-dehydrorhamnose reductase {ECO:0000313|EMBL:EEA81233.1}; EC=1.1.1.133 {ECO:0000313|EMBL:EEA81233.1};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133)
dTDP-4-dehydrorhamnose reductase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRU9_9CLOT
L3_108_365G1_scaffold_197_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18888..19184)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRV0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81234.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_108_365G1_scaffold_197_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19255..20538)
DNA (1284bp) protein (428aa)
phosphoribosyl-ATP pyrophosphohydrolase (EC:3.6.1.31 3.5.4.19)
Phosphoribosyl-ATP diphosphatase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRV1_9CLOT
Histidine biosynthesis bifunctional protein HisIE {ECO:0000256|HAMAP-Rule:MF_01019, ECO:0000256|SAAS:SAAS00015509}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_108_365G1_scaffold_197_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20538..21041)
DNA (504bp) protein (168aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PXE4_9CLOT
L3_108_365G1_scaffold_197_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21052..22344)
DNA (1293bp) protein (431aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
histidinol dehydrogenase (EC:1.1.1.23)
Histidinol dehydrogenase n=2 Tax=Clostridium RepID=B6FRV3_9CLOT
L3_108_365G1_scaffold_197_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22346..22990)
DNA (645bp) protein (215aa)
ATP phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00008790}; Short=ATP-PRT {ECO:0000256|HAMAP-Rule:MF_01018};; Short=ATP-PRTase {ECO:0000256|HAMAP-Rule:MF_01018};; EC=2.4.2.17 {ECO:0000256|HAMAP-Rule:MF_01018, ECO:0000256|SAAS:SAAS00046302};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ATP phosphoribosyltransferase catalytic subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRV4_9CLOT
L3_108_365G1_scaffold_197_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22987..24243)
DNA (1257bp) protein (419aa)
ATP phosphoribosyltransferase regulatory subunit (EC:2.4.2.17)
ATP phosphoribosyltransferase regulatory subunit n=2 Tax=Clostridium RepID=B6FRV5_9CLOT
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_108_365G1_scaffold_197_22
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24314..24847)
DNA (534bp) protein (178aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Holliday junction resolvase RecU n=2 Tax=Clostridium RepID=B6FRV6_9CLOT
Penicillin-binding protein-related factor A, putative recombinase
L3_108_365G1_scaffold_197_23
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24852..25823)
DNA (972bp) protein (324aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Pseudouridine synthase, RluA family n=2 Tax=Clostridium RepID=B6FRV7_9CLOT
RluA family pseudouridine synthase
L3_108_365G1_scaffold_197_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25833..26408)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRV8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEA81242.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_108_365G1_scaffold_197_25
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26425..27183)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PFM5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23133.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Short-chain dehydrogenases of various substrate specificities
L3_108_365G1_scaffold_197_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27211..29115)
DNA (1905bp) protein (635aa)
UPF0313 protein CLONEX_02884 n=2 Tax=Clostridium RepID=B6FRW0_9CLOT
UPF0313 protein CLONEX_02884 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_108_365G1_scaffold_197_27
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29112..29783)
DNA (672bp) protein (224aa)
HAD hydrolase, family IA, variant 3 n=2 Tax=Clostridium RepID=B6FRW1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC23135.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
HAD family hydrolase
L3_108_365G1_scaffold_197_28
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29777..30481)
DNA (705bp) protein (235aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ribosomal small subunit pseudouridine synthase A (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRW2_9CLOT
L3_108_365G1_scaffold_197_29
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30481..31863)
DNA (1383bp) protein (461aa)
NOL1/NOP2/sun family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRW3_9CLOT
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EEA81247.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_108_365G1_scaffold_197_30
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31924..32766)
DNA (843bp) protein (281aa)
Peptidase, M23 family n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FRW4_9CLOT
Peptidase, M23 family {ECO:0000313|EMBL:EEA81248.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
peptidase M23
Displaying items 1-30 of 407 in total

View Taxonomy