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L3_108_365G1_scaffold_271

Search features with annotation key words

Displaying items 1-30 of 123 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_365G1_scaffold_271_1
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(703..3213)
DNA (2511bp) protein (837aa)
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
DNA gyrase subunit A (EC:5.99.1.3)
DNA gyrase subunit A n=8 Tax=Clostridium clostridioforme RepID=G5I784_9CLOT
L3_108_365G1_scaffold_271_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3282..5198)
DNA (1917bp) protein (639aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
DNA gyrase subunit B (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWV6_9CLOT
L3_108_365G1_scaffold_271_3
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5241..6326)
DNA (1086bp) protein (362aa)
DNA replication and repair protein RecF n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGE8_9CLOT
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|RuleBase:RU000578}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
DNA replication and repair protein RecF
L3_108_365G1_scaffold_271_4
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6346..6555)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGK4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41205.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_108_365G1_scaffold_271_5
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6695..7813)
DNA (1119bp) protein (373aa)
DNA polymerase III subunit beta {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018186}; EC=2.7.7.7 {ECO:0000256|PIRNR:PIRNR000804, ECO:0000256|SAAS:SAAS00018259};; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
DNA polymerase III, beta subunit (EC:2.7.7.7)
DNA polymerase III subunit beta n=7 Tax=Clostridium RepID=A8S2L9_9CLOT
L3_108_365G1_scaffold_271_6
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8094..9470)
DNA (1377bp) protein (459aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILL9_9CLOT
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
chromosomal replication initiator protein DnaA
L3_108_365G1_scaffold_271_7
unknown

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9665..9859
DNA (195bp) protein (65aa)

This feature has no annotations

L3_108_365G1_scaffold_271_8
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9886..10503
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CT04_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EEG57783.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Predicted membrane protein
L3_108_365G1_scaffold_271_9
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10487..12112)
DNA (1626bp) protein (542aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JBT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES77226.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_108_365G1_scaffold_271_10
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12681..12815
DNA (135bp) protein (45aa)
50S ribosomal protein L34 n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWW5_9CLOT
50S ribosomal protein L34 {ECO:0000256|HAMAP-Rule:MF_00391, ECO:0000256|SAAS:SAAS00020245}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
LSU ribosomal protein L34P
L3_108_365G1_scaffold_271_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12912..13256
DNA (345bp) protein (115aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ribonuclease P protein component (EC:3.1.26.5)
Ribonuclease P protein component n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWQ0_9CLOT
L3_108_365G1_scaffold_271_12
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13615..14937
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ILM3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41214.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
membrane protein insertase, YidC/Oxa1 family, C-terminal domain
L3_108_365G1_scaffold_271_13
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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14949..15743
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQU9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ60393.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Predicted RNA-binding protein
L3_108_365G1_scaffold_271_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15823..17202
DNA (1380bp) protein (460aa)
tRNA modification GTPase MnmE {ECO:0000256|HAMAP-Rule:MF_00379}; EC=3.6.-.- {ECO:0000256|HAMAP-Rule:MF_00379};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
tRNA modification GTPase MnmE n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGL9_9CLOT
tRNA modification GTPase TrmE
L3_108_365G1_scaffold_271_15
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17199..19097
DNA (1899bp) protein (633aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWX5_9CLOT
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG {ECO:0000256|HAMAP-Rule:MF_00129}; Glucose-inhibited division protein A {ECO:0000256|HAMAP-Rule:MF_00129}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
glucose-inhibited division protein A
L3_108_365G1_scaffold_271_16
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19112..19843
DNA (732bp) protein (244aa)
Ribosomal RNA small subunit methyltransferase G {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00095882}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00074, ECO:0000256|SAAS:SAAS00277524};; 16S rRNA 7-methylguanosine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00074}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
16S rRNA m(7)G-527 methyltransferase (EC:2.1.-.- 2.1.1.-)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWR2_9CLOT
L3_108_365G1_scaffold_271_17
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19916..21031
DNA (1116bp) protein (372aa)
LacI family transcriptional regulator n=8 Tax=Clostridium RepID=N9WS55_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23200.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
LacI family transcriptional regulator
L3_108_365G1_scaffold_271_18
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21088..21921)
DNA (834bp) protein (278aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
Endonuclease IV (EC:3.1.21.2 3.1.21.-)
Probable endonuclease 4 n=2 Tax=Clostridium bolteae RepID=R0B147_9CLOT
L3_108_365G1_scaffold_271_19
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22009..22968)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGM3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41225.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
alpha/beta fold family hydrolase
L3_108_365G1_scaffold_271_20
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23214..24029
DNA (816bp) protein (272aa)
Chromosome partitioning protein n=9 Tax=Clostridium RepID=N9W9U6_9CLOT
Chromosome partitioning protein {ECO:0000313|EMBL:ENZ07602.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
chromosome partitioning protein
L3_108_365G1_scaffold_271_21
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24029..24829
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWR5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41227.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
parB-like partition protein
L3_108_365G1_scaffold_271_22
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24996..25508
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGG7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY41228.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_108_365G1_scaffold_271_23
Mus musculus, Mus, Rodentia, Mammalia, Chordata, Metazoa

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25742..27034
DNA (1293bp) protein (431aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HJ41_9CLOT
Proline-rich protein HaeIII subfamily 1 {ECO:0000313|Ensembl:ENSMUSP00000135877}; TaxID=10090 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus.;" source="Mus musculus (Mouse).;"
hypothetical protein
L3_108_365G1_scaffold_271_24
unknown

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27022..27201
DNA (180bp) protein (60aa)

This feature has no annotations

L3_108_365G1_scaffold_271_25
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27313..29892
DNA (2580bp) protein (860aa)
Uncharacterized protein n=4 Tax=Clostridium bolteae RepID=A8S481_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ35103.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
hypothetical protein
L3_108_365G1_scaffold_271_26
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30183..31475
DNA (1293bp) protein (431aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IGM7_9CLOT
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
L3_108_365G1_scaffold_271_27
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31566..33422
DNA (1857bp) protein (619aa)
5'-nucleotidase (EC:3.1.3.5)
5'-nucleotidase, C-terminal domain protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQX3_9FIRM
5'-nucleotidase, C-terminal domain protein {ECO:0000313|EMBL:EEQ60417.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
L3_108_365G1_scaffold_271_28
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33872..35140
DNA (1269bp) protein (423aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IWY6_9CLOT
L3_108_365G1_scaffold_271_29
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35268..36710)
DNA (1443bp) protein (481aa)
Cell wall binding repeat-containing protein n=2 Tax=Clostridium bolteae RepID=N9ZEK1_9CLOT
Cell wall binding repeat-containing protein {ECO:0000313|EMBL:ENZ47652.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
cell wall binding repeat-containing protein
L3_108_365G1_scaffold_271_30
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37021..37743
DNA (723bp) protein (241aa)
Transcriptional regulator, MerR family n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EWC7_9FIRM
Transcriptional regulator, MerR family {ECO:0000313|EMBL:EEQ62321.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
transcriptional regulator of the multidrug efflux pump
Displaying items 1-30 of 123 in total

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