ggKbase home page

L3_108_365G1_scaffold_852

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_365G1_scaffold_852_1
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..121
DNA (120bp) protein (40aa)
Radical SAM additional 4Fe4S-binding domain-containing protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ71_9FIRM
Radical SAM protein {ECO:0000313|EMBL:KJF41105.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
radical SAM protein
L3_108_365G1_scaffold_852_2
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

124..702
DNA (579bp) protein (193aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63956.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
nitroreductase
L3_108_365G1_scaffold_852_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

712..1326
DNA (615bp) protein (205aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ73_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63957.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
pyridoxamine 5'-phosphate oxidase
L3_108_365G1_scaffold_852_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1335..2207
DNA (873bp) protein (291aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ74_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63958.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_852_5
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2200..2991
DNA (792bp) protein (264aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF41109.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1
L3_108_365G1_scaffold_852_6
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3054..3890)
DNA (837bp) protein (279aa)
Probable endonuclease 4 {ECO:0000256|HAMAP-Rule:MF_00152}; EC=3.1.21.2 {ECO:0000256|HAMAP-Rule:MF_00152};; Endodeoxyribonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; Endonuclease IV {ECO:0000256|HAMAP-Rule:MF_00152}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Endonuclease IV (EC:3.1.21.2 3.1.21.-)
Probable endonuclease 4 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ76_9FIRM
L3_108_365G1_scaffold_852_7
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4143..4625
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ77_9FIRM
DNA alkylation repair protein {ECO:0000313|EMBL:KJF41110.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
DNA alkylation repair protein
L3_108_365G1_scaffold_852_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4692..5351)
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ79_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63963.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_852_9
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5459..6295
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ80_9FIRM
MerR family transcriptional regulator {ECO:0000313|EMBL:KJF41112.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
regulatory protein MerR
L3_108_365G1_scaffold_852_10
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6285..6596
DNA (312bp) protein (104aa)
Methylated-DNA-[protein]-cysteine S-methyltransferase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ81_9FIRM
Methylated-DNA-[protein]-cysteine S-methyltransferase {ECO:0000313|EMBL:EHL63965.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
methylated-DNA--protein-cysteine methyltransferase
L3_108_365G1_scaffold_852_11
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6702..7577
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63966.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
transcriptional regulator
L3_108_365G1_scaffold_852_12
unknown

Not on your lists

7574..7693
DNA (120bp) protein (40aa)

This feature has no annotations

L3_108_365G1_scaffold_852_13
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7686..8063)
DNA (378bp) protein (126aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63967.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_108_365G1_scaffold_852_14
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8090..9088)
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ84_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63968.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
protein of unknown function DUF1848
L3_108_365G1_scaffold_852_15
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9278..9844
DNA (567bp) protein (189aa)
Putative sporulation protein YtaF n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ85_9FIRM
Putative sporulation protein YtaF {ECO:0000313|EMBL:EHL63969.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
sporulation protein YtaF
L3_108_365G1_scaffold_852_16
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9948..11786
DNA (1839bp) protein (613aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ86_9FIRM
L3_108_365G1_scaffold_852_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11839..13074)
DNA (1236bp) protein (412aa)
HI0933 family flavoprotein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ87_9FIRM
HI0933 family flavoprotein {ECO:0000313|EMBL:EHL63971.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_852_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13407..14630
DNA (1224bp) protein (408aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63972.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_852_19
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14856..16067
DNA (1212bp) protein (404aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63973.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
L3_108_365G1_scaffold_852_20
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16224..17297
DNA (1074bp) protein (358aa)
Sporulation integral membrane protein YtvI n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ90_9FIRM
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:EHL63974.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
sporulation integral membrane protein
L3_108_365G1_scaffold_852_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17370..18353)
DNA (984bp) protein (328aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63975.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
DNA-binding domain-containing protein
L3_108_365G1_scaffold_852_22
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18406..19083)
DNA (678bp) protein (226aa)
ComF family protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ92_9FIRM
ComF family protein {ECO:0000313|EMBL:EHL63976.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted amidophosphoribosyltransferases
L3_108_365G1_scaffold_852_23
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19101..21311)
DNA (2211bp) protein (737aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
helicase, putative, RecD/TraA family (EC:3.1.11.5)
RecD/TraA family helicase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ93_9FIRM
L3_108_365G1_scaffold_852_24
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21564..21884)
DNA (321bp) protein (107aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63978.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_108_365G1_scaffold_852_25
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21960..23720)
DNA (1761bp) protein (587aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ95_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63979.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_852_26
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24013..25155)
DNA (1143bp) protein (381aa)
S-adenosylmethionine synthase {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541}; Short=AdoMet synthase {ECO:0000256|HAMAP-Rule:MF_00086};; EC=2.5.1.6 {ECO:0000256|HAMAP-Rule:MF_00086, ECO:0000256|RuleBase:RU000541};; MAT {ECO:0000256|HAMAP-Rule:MF_00086}; Methionine adenosyltransferase {ECO:0000256|HAMAP-Rule:MF_00086}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ96_9FIRM
L3_108_365G1_scaffold_852_27
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25373..25939)
DNA (567bp) protein (189aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ97_9FIRM
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_108_365G1_scaffold_852_28
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26360..27478
DNA (1119bp) protein (373aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ98_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63982.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
mechanosensitive ion channel protein
L3_108_365G1_scaffold_852_29
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27475..28203
DNA (729bp) protein (243aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63983.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_108_365G1_scaffold_852_30
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28474..28848
DNA (375bp) protein (125aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZA0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63984.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
GntR family transcriptional regulator
Displaying items 1-30 of 47 in total

View Taxonomy