ggKbase home page

L3_108_365G1_scaffold_922

Search features with annotation key words

Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_108_365G1_scaffold_922_1
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(331..684)
DNA (354bp) protein (118aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWT5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66388.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Uncharacterized protein with conserved CXXC pairs
L3_108_365G1_scaffold_922_2
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(688..1950)
DNA (1263bp) protein (421aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWT6_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:KJF40789.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Thioredoxin reductase
L3_108_365G1_scaffold_922_3
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1940..3382)
DNA (1443bp) protein (481aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66390.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Predicted dehydrogenase
L3_108_365G1_scaffold_922_4
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3773..4627)
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66391.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Protein of unknown function (DUF2899).
L3_108_365G1_scaffold_922_5
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4884..6392
DNA (1509bp) protein (503aa)
ferredoxin hydrogenase, large subunit (EC:1.12.7.2)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66392.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_108_365G1_scaffold_922_6
unknown

Not on your lists

comp(6345..6479)
DNA (135bp) protein (45aa)

This feature has no annotations

L3_108_365G1_scaffold_922_7
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6472..7485)
DNA (1014bp) protein (338aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66393.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Lysophospholipase L1 and related esterases
L3_108_365G1_scaffold_922_8
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7518..8516)
DNA (999bp) protein (333aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWU1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66394.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Lysophospholipase L1 and related esterases
L3_108_365G1_scaffold_922_9
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8572..9783)
DNA (1212bp) protein (404aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWU2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66395.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
GDSL-like Lipase/Acylhydrolase.
L3_108_365G1_scaffold_922_10
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9999..11012)
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RWU3_9FIRM
L3_108_365G1_scaffold_922_11
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11277..11987
DNA (711bp) protein (237aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
osmosensitive K+ channel signal transduction histidine kinase (EC:2.7.3.-)
Putative uncharacterized protein (Fragment) n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX17_9FIRM
L3_108_365G1_scaffold_922_12
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11938..12807)
DNA (870bp) protein (290aa)
Stage II sporulation protein R n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX18_9FIRM
Stage II sporulation protein R {ECO:0000313|EMBL:EHL66195.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
stage II sporulation protein R
L3_108_365G1_scaffold_922_13
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12967..14316)
DNA (1350bp) protein (450aa)
Magnesium transporter n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX19_9FIRM
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
magnesium transporter
L3_108_365G1_scaffold_922_14
unknown

Not on your lists

14361..14924
DNA (564bp) protein (188aa)

This feature has no annotations

L3_108_365G1_scaffold_922_15
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14746..15213)
DNA (468bp) protein (156aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX20_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66197.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_922_16
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15256..16128)
DNA (873bp) protein (291aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
4-diphosphocytidyl-2C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX21_9FIRM
L3_108_365G1_scaffold_922_17
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16144..16347)
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66199.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_108_365G1_scaffold_922_18
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16364..17047)
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66200.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_922_19
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17427..18596)
DNA (1170bp) protein (390aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX24_9FIRM
Aromatic amino acid aminotransferase {ECO:0000313|EMBL:KJF40796.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
Aspartate/tyrosine/aromatic aminotransferase
L3_108_365G1_scaffold_922_20
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18596..19069)
DNA (474bp) protein (158aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66202.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Transcriptional regulators
L3_108_365G1_scaffold_922_21
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19342..19611
DNA (270bp) protein (90aa)
UPF0237 protein HMPREF1032_00755 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX26_9FIRM
UPF0237 protein HMPREF1032_00755 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
ACT domain-containing protein
L3_108_365G1_scaffold_922_22
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19627..20988
DNA (1362bp) protein (454aa)
UPF0210 protein HMPREF1032_00756 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX27_9FIRM
UPF0210 protein TQ39_04605 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
hypothetical protein
L3_108_365G1_scaffold_922_23
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21216..21575
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CI34_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA76323.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L3_108_365G1_scaffold_922_24
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21760..21975
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX29_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66206.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
hypothetical protein
L3_108_365G1_scaffold_922_25
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22239..22664
DNA (426bp) protein (142aa)
YjeE family ATPase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX30_9FIRM
DNA-binding protein {ECO:0000313|EMBL:KJF40802.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
conserved hypothetical nucleotide-binding protein
L3_108_365G1_scaffold_922_26
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22661..23353
DNA (693bp) protein (231aa)
Universal bacterial protein YeaZ n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX31_9FIRM
Universal bacterial protein YeaZ {ECO:0000313|EMBL:EHL66208.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Inactive homolog of metal-dependent proteases, putative molecular chaperone
L3_108_365G1_scaffold_922_27
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23416..23862
DNA (447bp) protein (149aa)
ribose-5-phosphate isomerase (EC:5.3.1.6)
Ribose 5-phosphate isomerase B n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX32_9FIRM
Ribose 5-phosphate isomerase B {ECO:0000313|EMBL:EHL66209.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_108_365G1_scaffold_922_28
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23914..24543
DNA (630bp) protein (210aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX33_9FIRM
L3_108_365G1_scaffold_922_29
Ruminococcaceae bacterium 585-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24596..26602
DNA (2007bp) protein (669aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KJF40806.1}; TaxID=1550024 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium 585-1.;"
DnaJ domain-containing protein
L3_108_365G1_scaffold_922_30
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26845..27207)
DNA (363bp) protein (121aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RX35_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL66212.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
Displaying items 1-30 of 89 in total

View Taxonomy