ggKbase home page

L3_114_000G1_scaffold_22

Search features with annotation key words

Displaying items 1-30 of 272 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_22_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..958
DNA (957bp) protein (319aa)
Phage/plasmid primase, P4 family domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M558_9FIRM
Phage/plasmid primase, P4 family domain protein {ECO:0000313|EMBL:ERJ94458.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
phage/plasmid primase, P4 family, C-terminal domain
L3_114_000G1_scaffold_22_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1336..2625
DNA (1290bp) protein (430aa)
Plasmid recombination enzyme n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KQV3_9FIRM
Plasmid recombination enzyme {ECO:0000313|EMBL:ERJ94460.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Plasmid recombination enzyme.
L3_114_000G1_scaffold_22_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2783..3013
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2KQA4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERJ94462.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_22_4
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2976..4673
DNA (1698bp) protein (566aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C8T6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35113.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_114_000G1_scaffold_22_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4718..5023
DNA (306bp) protein (102aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K395_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97988.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000G1_scaffold_22_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5533..6015)
DNA (483bp) protein (161aa)
SsrA-binding protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K398_9FIRM
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000G1_scaffold_22_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6121..6720)
DNA (600bp) protein (200aa)
Recombination protein RecR n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K399_9FIRM
recombination protein RecR
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000G1_scaffold_22_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6736..7074)
DNA (339bp) protein (113aa)
Nucleoid-associated protein FP2_03180 n=2 Tax=root RepID=D4K3A0_9FIRM
conserved hypothetical protein TIGR00103
Nucleoid-associated protein FP2_03180 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000G1_scaffold_22_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7101..8972)
DNA (1872bp) protein (624aa)
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III, subunits gamma and tau {ECO:0000313|EMBL:CBK97994.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBK97994.1};; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
DNA polymerase III, subunits gamma and tau n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K3A1_9FIRM
L3_114_000G1_scaffold_22_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9249..9932)
DNA (684bp) protein (228aa)
RNA polymerase sigma factor n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S655_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
sigK; RNA polymerase sigma-K factor (sporulation-specific)
L3_114_000G1_scaffold_22_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9964..10830)
DNA (867bp) protein (289aa)
Resolvase, N-terminal domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H566_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EEU96984.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_114_000G1_scaffold_22_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10990..11226
DNA (237bp) protein (79aa)
Relaxase/Mobilisation nuclease domain n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K7P1_9FIRM
Relaxase/Mobilisation nuclease domain.
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EDP22892.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L3_114_000G1_scaffold_22_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11234..11374
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZGJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07684.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
L3_114_000G1_scaffold_22_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11361..14558
DNA (3198bp) protein (1066aa)
PAS domain S-box protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7I5_9FIRM
PAS domain S-box protein {ECO:0000313|EMBL:EEU96128.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
PAS domain S-box
L3_114_000G1_scaffold_22_15
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14709..16763
DNA (2055bp) protein (685aa)
Glycosyl hydrolase, family 31 {ECO:0000313|EMBL:EFQ07685.1}; EC=3.2.1.- {ECO:0000313|EMBL:EFQ07685.1};; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
Alpha-glucosidases, family 31 of glycosyl hydrolases (EC:3.2.1.20)
Glycosyl hydrolase, family 31 n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZGJ9_9FIRM
L3_114_000G1_scaffold_22_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16914..17819)
DNA (906bp) protein (302aa)
Predicted Na+-dependent transporter n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K728_9FIRM
Predicted Na+-dependent transporter
Predicted Na+-dependent transporter {ECO:0000313|EMBL:CBL00641.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_114_000G1_scaffold_22_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18074..18286)
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9Q0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95375.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
L3_114_000G1_scaffold_22_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18388..18765
DNA (378bp) protein (126aa)
Desulfoferrodoxin n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K8E2_9FIRM
Desulfoferrodoxin
Desulfoferrodoxin {ECO:0000313|EMBL:CBL01105.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_114_000G1_scaffold_22_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18888..19871
DNA (984bp) protein (328aa)
Predicted dehydrogenases and related proteins n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K8E6_9FIRM
Predicted dehydrogenases and related proteins
Predicted dehydrogenases and related proteins {ECO:0000313|EMBL:CBL01109.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_114_000G1_scaffold_22_20
Bifidobacterium boum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20074..20346)
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:KFI48425.1}; TaxID=78343 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium boum.;"
L3_114_000G1_scaffold_22_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20733..21500
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K8E8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL01111.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_114_000G1_scaffold_22_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21643..22161
DNA (519bp) protein (173aa)
Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JYV6_9FIRM
Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) {ECO:0000313|EMBL:CBK99205.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000G1_scaffold_22_23
Clostridium sp. CAG:590, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22389..22547
DNA (159bp) protein (53aa)
YbaK/EbsC protein n=1 Tax=Clostridium sp. CAG:590 RepID=R5E3L3_9CLOT
YbaK/EbsC protein {ECO:0000313|EMBL:CCX87063.1}; TaxID=1262825 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:590.;"
hypothetical protein
L3_114_000G1_scaffold_22_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22780..23562
DNA (783bp) protein (261aa)
Predicted divalent heavy-metal cations transporter n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K8F2_9FIRM
Predicted divalent heavy-metal cations transporter
Predicted divalent heavy-metal cations transporter {ECO:0000313|EMBL:CBL01115.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_114_000G1_scaffold_22_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23810..24421
DNA (612bp) protein (204aa)
Methyltransferase domain protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8Q0_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:EDP22382.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L3_114_000G1_scaffold_22_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24444..25127
DNA (684bp) protein (228aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JYW5_9FIRM
Methylase involved in ubiquinone/menaquinone biosynthesis
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:CBK99214.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000G1_scaffold_22_27
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25147..25359
DNA (213bp) protein (71aa)
O-methyltransferase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00030ED4EA
O-Methyltransferase involved in polyketide biosynthesis
O-Methyltransferase involved in polyketide biosynthesis {ECO:0000313|EMBL:CBL41190.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_114_000G1_scaffold_22_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25378..25986
DNA (609bp) protein (203aa)
O-Methyltransferase involved in polyketide biosynthesis n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K8F3_9FIRM
O-Methyltransferase involved in polyketide biosynthesis
O-Methyltransferase involved in polyketide biosynthesis {ECO:0000313|EMBL:CBL01116.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_114_000G1_scaffold_22_29
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25986..26261
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Faecalibacterium cf. prausnitzii KLE1255 RepID=E2ZHH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ07368.1}; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
hypothetical protein
L3_114_000G1_scaffold_22_30
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26205..26468)
DNA (264bp) protein (88aa)
Transporter, YbiR family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4JYW8_9FIRM
transporter, YbiR family
Transporter, YbiR family {ECO:0000313|EMBL:CBK99217.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Displaying items 1-30 of 272 in total

View Taxonomy