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L3_114_000G1_scaffold_41

Search features with annotation key words

Displaying items 1-30 of 199 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_41_1
Corallococcus sp. CAG:1435, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1179)
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Corallococcus sp. CAG:1435 RepID=R5WHR1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:CCZ95356.1}; TaxID=1262867 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus; environmental samples.;" source="Corallococcus sp. CAG:1435.;"
L3_114_000G1_scaffold_41_2
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1470..1844
DNA (375bp) protein (125aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EN74_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EEQ59670.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
transcriptional regulator
L3_114_000G1_scaffold_41_3
Clostridium ljungdahlii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1917..2777
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Bacillus sp. AP8 RepID=UPI0003124B6A
ABC transporter ATPase
Predicted ABC transporter, ATPase component {ECO:0000313|EMBL:ADK16569.1}; TaxID=748727 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ljungdahlii (strain ATCC 55383 / DSM 13528 / PETC).;"
L3_114_000G1_scaffold_41_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2774..3400
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Bacillus sp. AP8 RepID=UPI0002D5F529
ABC transporter permease
Putative ABC transporter, permease protein {ECO:0000313|EMBL:CBE04873.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_114_000G1_scaffold_41_5
unknown

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3505..4284
DNA (780bp) protein (260aa)

This feature has no annotations

L3_114_000G1_scaffold_41_6
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4342..5454
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Zymophilus raffinosivorans RepID=UPI000381499D
Putative arabinose metabolism transcriptional repressor {ECO:0000313|EMBL:CCX39038.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
GntR family transcriptional regulator with LacI sensor
L3_114_000G1_scaffold_41_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5451..6041
DNA (591bp) protein (197aa)
5'-nucleotidase YfbR {ECO:0000313|EMBL:EJF41607.1}; EC=3.1.3.5 {ECO:0000313|EMBL:EJF41607.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
metal dependent phosphohydrolase (EC:3.1.3.5)
5''''-nucleotidase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000373ABB8
L3_114_000G1_scaffold_41_8
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6129..6854
DNA (726bp) protein (242aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
Ribosomal RNA small subunit methyltransferase E n=2 Tax=Clostridium RepID=A7VNI9_9CLOT
hypothetical protein
L3_114_000G1_scaffold_41_9
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6942..7808
DNA (867bp) protein (289aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
pyridoxal kinase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000368BBF9
phosphomethylpyrimidine kinase type-1
L3_114_000G1_scaffold_41_10
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7859..8188)
DNA (330bp) protein (110aa)
Thioredoxin n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VP29_CLOSH
thioredoxin
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_114_000G1_scaffold_41_11

Not on your lists

8612..11923
DNA (3312bp) protein (1104aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0002F9BC19
S-layer domain-containing protein {ECO:0000313|EMBL:AHF24757.1}; TaxID=1393397 species="Bacteria; environmental samples.;" source="uncultured bacterium Contig12.;"
rhamnogalacturonan lyase
L3_114_000G1_scaffold_41_12
Firmicutes bacterium CAG:882, Firmicutes, Bacteria

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12379..16149
DNA (3771bp) protein (1257aa)
S-layer domain-containing protein n=1 Tax=Firmicutes bacterium CAG:882 RepID=R7BHM6_9FIRM
S-layer domain-containing protein {ECO:0000313|EMBL:CDD65042.1}; TaxID=1262991 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:882.;"
s-layer domain-containing protein
L3_114_000G1_scaffold_41_13
Paenibacillus sp. TCA20, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(16572..20027)
DNA (3456bp) protein (1152aa)
hypothetical protein n=1 Tax=Gracilibacillus lacisalsi RepID=UPI0003788754
FG-GAP repeat-containing protein {ECO:0000313|EMBL:GAK42426.1}; TaxID=1499968 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. TCA20.;"
FG-GAP repeat-containing protein
L3_114_000G1_scaffold_41_14
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20851..22461)
DNA (1611bp) protein (537aa)
ABC1 family protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EHQ9_9CLOT
ABC1 family protein {ECO:0000313|EMBL:EEG28989.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_114_000G1_scaffold_41_15
Clostridium sp. CAG:632, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22427..22774)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:632 RepID=R5KDN1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY59047.1}; TaxID=1262830 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:632.;"
hypothetical protein
L3_114_000G1_scaffold_41_16
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23003..24556)
DNA (1554bp) protein (518aa)
Putative stage V sporulation protein B n=1 Tax=Clostridium leptum DSM 753 RepID=A7VPC0_9CLOT
Putative stage V sporulation protein B {ECO:0000313|EMBL:EDO62807.1}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DSM 753.;"
polysaccharide biosynthesis protein
L3_114_000G1_scaffold_41_17
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24662..24964)
DNA (303bp) protein (101aa)
6-O-methylguanine DNA methyltransferase, DNA binding domain protein n=2 Tax=Oscillibacter RepID=U2QY37_9FIRM
6-O-methylguanine DNA methyltransferase, DNA binding domain protein {ECO:0000313|EMBL:ERK67845.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
methylated-DNA--protein-cysteine methyltransferase
L3_114_000G1_scaffold_41_18
Thermosinus carboxydivorans, Thermosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

25239..26180
DNA (942bp) protein (314aa)
cysK3; cysteine synthase CysK3 (EC:2.5.1.47)
Cysteine synthase A n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HP84_9FIRM
Cysteine synthase A {ECO:0000313|EMBL:EAX48191.1}; TaxID=401526 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Thermosinus.;" source="Thermosinus carboxydivorans Nor1.;"
L3_114_000G1_scaffold_41_19
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26289..27236)
DNA (948bp) protein (316aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EJF41598.1}; EC=2.4.-.- {ECO:0000313|EMBL:EJF41598.1};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
bactoprenol glucosyl transferase n=1 Tax=Clostridium sporosphaeroides RepID=UPI000368DFA5
glycosyl transferase 2 family protein
L3_114_000G1_scaffold_41_20
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27243..29915)
DNA (2673bp) protein (891aa)
Uncharacterized protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6NFD8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC04936.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
hypothetical protein
L3_114_000G1_scaffold_41_21
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30187..30729
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K5Q1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN42581.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_114_000G1_scaffold_41_22
Methylomicrobium album, Methylomicrobium, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31252..32250
DNA (999bp) protein (333aa)
L-asparaginase/GlutRNAGln amidotransferase subunit D n=1 Tax=Methylomicrobium album BG8 RepID=H8GND0_METAL
L-asparaginase/GlutRNAGln amidotransferase subunit D {ECO:0000313|EMBL:EIC28359.1}; TaxID=686340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomicrobium.;" source="Methylomicrobium album BG8.;"
L-asparaginase/glutRNAGln amidotransferase subunit D
L3_114_000G1_scaffold_41_23
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32442..33335
DNA (894bp) protein (298aa)
Shikimate/quinate 5-dehydrogenase n=1 Tax=Ethanoligenens harbinense (strain DSM 18485 / JCM 12961 / CGMCC 1.5033 / YUAN-3) RepID=E6U413_ETHHY
shikimate/quinate 5-dehydrogenase
Shikimate/quinate 5-dehydrogenase {ECO:0000313|EMBL:CDZ24106.1}; TaxID=29343 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] cellulosi.;"
L3_114_000G1_scaffold_41_24
Clostridium sp. CAG:557, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33323..33907
DNA (585bp) protein (195aa)
Dipicolinate synthase subunit B {ECO:0000256|PIRNR:PIRNR001390}; Short=DPA synthase subunit B {ECO:0000256|PIRNR:PIRNR001390};; EC=1.3.1.- {ECO:0000256|PIRNR:PIRNR001390};; Spore dipicolinate synthase subunit B {ECO:0000256|PIRNR:PIRNR001390}; Stage V sporulation protein FB {ECO:0000256|PIRNR:PIRNR001390}; TaxID=1262819 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:557.;"
Dipicolinate synthase subunit B n=1 Tax=Clostridium sp. CAG:557 RepID=R6GDV6_9CLOT
dipicolinic acid synthetase subunit B
L3_114_000G1_scaffold_41_25
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34276..34488
DNA (213bp) protein (71aa)
Transcriptional regulator, HTH-type n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AYD8_CLOA9
transcriptional regulator, HTH-type
Transcriptional regulator, HTH-type {ECO:0000313|EMBL:AFS78274.1}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a).;"
L3_114_000G1_scaffold_41_26
unknown

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comp(34692..34919)
DNA (228bp) protein (76aa)

This feature has no annotations

L3_114_000G1_scaffold_41_27
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35137..35859
DNA (723bp) protein (241aa)
NAD-dependent protein deacetylase {ECO:0000256|HAMAP-Rule:MF_01968}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01968};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01968}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
NAD-dependent protein deacetylase n=1 Tax=Roseburia sp. CAG:100 RepID=R7R6K1_9FIRM
transcriptional regulator
L3_114_000G1_scaffold_41_28
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35871..36122
DNA (252bp) protein (84aa)
TfoX C-terminal domain protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E9X5_9CLOT
TfoX C-terminal domain protein {ECO:0000313|EMBL:EEG31730.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
hypothetical protein
L3_114_000G1_scaffold_41_29
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36342..37472)
DNA (1131bp) protein (377aa)
GTPase HflX n=2 Tax=Clostridium RepID=A7VSB8_9CLOT
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
GTP-binding protein HflX
L3_114_000G1_scaffold_41_30
Clostridium sp. KLE 1755, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37691..38923
DNA (1233bp) protein (411aa)
Uncharacterized protein n=1 Tax=Clostridium sp. KLE 1755 RepID=U2CHR0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI66871.1}; TaxID=1226325 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. KLE 1755.;"
hypothetical protein
Displaying items 1-30 of 199 in total

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