ggKbase home page

L3_114_000G1_scaffold_43

Search features with annotation key words

Displaying items 1-30 of 196 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_43_1
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

92..280
DNA (189bp) protein (63aa)
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YS61_9FIRM
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein {ECO:0000313|EMBL:EHM46632.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_114_000G1_scaffold_43_2
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(311..1189)
DNA (879bp) protein (293aa)
LysM domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YS60_9FIRM
LysM domain protein {ECO:0000313|EMBL:EHM46631.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
peptidoglycan-binding LysM
L3_114_000G1_scaffold_43_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1199..1939)
DNA (741bp) protein (247aa)
N-acetylmuramoyl-L-alanine amidase n=2 Tax=Clostridiales RepID=G9YS59_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:EHM46630.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
putative peptidoglycan hydrolase
L3_114_000G1_scaffold_43_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2058..3821)
DNA (1764bp) protein (588aa)
Phosphoenolpyruvate carboxykinase [GTP] {ECO:0000256|HAMAP-Rule:MF_00452, ECO:0000256|SAAS:SAAS00222031}; Short=PEP carboxykinase {ECO:0000256|HAMAP-Rule:MF_00452};; Short=PEPCK {ECO:0000256|HAMAP-Rule:MF_00452};; EC=4.1.1.32 {ECO:0000256|HAMAP-Rule:MF_00452};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
pckG; Phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2ARX9_9CLOT
L3_114_000G1_scaffold_43_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(3941..4801)
DNA (861bp) protein (287aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ksgA; dimethyladenosine transferase (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase A n=2 Tax=Clostridiales RepID=G9YS57_9FIRM
L3_114_000G1_scaffold_43_6
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4785..5447)
DNA (663bp) protein (221aa)
Acetyltransferase, GNAT family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C0T8_9CLOT
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERI62867.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
N-acetyltransferase GCN5
L3_114_000G1_scaffold_43_7
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5610..6038)
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1C700_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO35587.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_114_000G1_scaffold_43_8
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6038..7264)
DNA (1227bp) protein (409aa)
HTH domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AS41_9CLOT
HTH domain protein {ECO:0000313|EMBL:ERI62935.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
transcriptional regulator
L3_114_000G1_scaffold_43_9
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7264..7389)
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YS53_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM46624.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_114_000G1_scaffold_43_10
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7386..7895)
DNA (510bp) protein (170aa)
Toxin-antitoxin system, toxin component, GNAT family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YS52_9FIRM
Toxin-antitoxin system, toxin component, GNAT family {ECO:0000313|EMBL:EHM46623.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
acetyltransferase, ribosomal protein N-acetylase
L3_114_000G1_scaffold_43_11
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8003..8839)
DNA (837bp) protein (279aa)
DegV family EDD domain-containing protein n=2 Tax=Clostridiales RepID=H1C704_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55956.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
EDD domain protein, DegV family
L3_114_000G1_scaffold_43_12
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8947..9696)
DNA (750bp) protein (250aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
trmD; tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Clostridiales RepID=U2AAV1_9CLOT
L3_114_000G1_scaffold_43_13
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9689..10189)
DNA (501bp) protein (167aa)
Ribosome maturation factor RimM n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNL6_9FIRM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
16S rRNA processing protein RimM
L3_114_000G1_scaffold_43_14
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10273..10521)
DNA (249bp) protein (83aa)
UPF0109 protein HMPREF0372_01087 n=3 Tax=Clostridiales RepID=G9YNL5_9FIRM
UPF0109 protein HMPREF9460_01426 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_114_000G1_scaffold_43_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10521..10760)
DNA (240bp) protein (80aa)
30S ribosomal protein S16 n=3 Tax=Clostridiales RepID=G9YNL4_9FIRM
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
30S ribosomal protein S16
L3_114_000G1_scaffold_43_16
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(10828..12186)
DNA (1359bp) protein (453aa)
Signal recognition particle protein n=2 Tax=Clostridiales RepID=H1C709_9FIRM
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
ffh; signal recognition particle protein
L3_114_000G1_scaffold_43_17
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12190..12558)
DNA (369bp) protein (123aa)
Helix-turn-helix protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNL2_9FIRM
UPF0122 protein HMPREF9460_01429 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_114_000G1_scaffold_43_18
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12655..13434)
DNA (780bp) protein (260aa)
Putative nitrite transporter NirC n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C664_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF55963.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
formate/nitrite transporter family protein
L3_114_000G1_scaffold_43_19
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13611..14885
DNA (1275bp) protein (425aa)
Peptidase M16 inactive domain protein n=2 Tax=Clostridiales RepID=G9YNK9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55964.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
peptidase M16B family protein
L3_114_000G1_scaffold_43_20
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14890..16167
DNA (1278bp) protein (426aa)
Peptidase M16 inactive domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C0R8_9CLOT
Peptidase M16 inactive domain protein {ECO:0000313|EMBL:ERI62842.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
M16B family peptidase
L3_114_000G1_scaffold_43_21
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16167..17237
DNA (1071bp) protein (357aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
lgt; prolipoprotein diacylglycerol transferase (EC:2.4.99.-)
Prolipoprotein diacylglyceryl transferase n=2 Tax=Clostridiales RepID=G9YNK7_9FIRM
L3_114_000G1_scaffold_43_22
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17282..17800)
DNA (519bp) protein (173aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YNK6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM53464.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
hypothetical protein
L3_114_000G1_scaffold_43_23
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17917..18942)
DNA (1026bp) protein (342aa)
Periplasmic binding protein n=2 Tax=Clostridiales RepID=U2C654_9CLOT
Periplasmic binding protein {ECO:0000313|EMBL:ERI62846.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ABC-type enterochelin transport system, periplasmic component
L3_114_000G1_scaffold_43_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18993..19745)
DNA (753bp) protein (251aa)
ABC-type enterochelin transport system, ATPase component (EC:3.6.3.34)
Putative ferrichrome ABC transporter, ATP-binding protein FhuC n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C0S2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF55970.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_114_000G1_scaffold_43_25
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19749..20747)
DNA (999bp) protein (333aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=2 Tax=Clostridiales RepID=U2ATY3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF55971.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ABC-type enterochelin transport system, permease component
L3_114_000G1_scaffold_43_26
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20744..21760)
DNA (1017bp) protein (339aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=2 Tax=Clostridiales RepID=U2AAL4_9CLOT
Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:ERI62849.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ABC transporter permease subunit
L3_114_000G1_scaffold_43_27
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22118..23035
DNA (918bp) protein (306aa)
Putative stage III sporulation protein AA n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YNK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF55973.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
spoIIIAA; stage III sporulation protein AA
L3_114_000G1_scaffold_43_28
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23029..23541
DNA (513bp) protein (171aa)
Stage III sporulation protein AB n=3 Tax=Clostridiales RepID=H1C721_9FIRM
Stage III sporulation protein AB {ECO:0000313|EMBL:EHO35608.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
stage III sporulation protein AB
L3_114_000G1_scaffold_43_29
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23555..23749
DNA (195bp) protein (65aa)
Stage III sporulation protein AC n=3 Tax=Clostridiales RepID=G9YNJ9_9FIRM
Stage III sporulation protein AC {ECO:0000313|EMBL:ERI62677.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
stage III sporulation protein AC
L3_114_000G1_scaffold_43_30
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23753..24139
DNA (387bp) protein (129aa)
Stage III sporulation protein AD n=3 Tax=Clostridiales RepID=H1C723_9FIRM
Stage III sporulation protein AD {ECO:0000313|EMBL:EHO35610.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
stage III sporulation protein AD
Displaying items 1-30 of 196 in total

View Taxonomy