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L3_114_000G1_scaffold_103

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Displaying items 1-30 of 123 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_103_1
Salmonella enterica, Salmonella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..240
DNA (240bp) protein (80aa)
ATP-dependent Clp protease adapter protein ClpS n=16 Tax=Escherichia coli RepID=L3DJW4_ECOLX
clpS; ATP-dependent Clp protease adaptor protein ClpS
ATP-dependent Clp protease adapter protein ClpS {ECO:0000256|HAMAP-Rule:MF_00302}; TaxID=1173780 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella.;" source="Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15 str.; 01-0170.;"
L3_114_000G1_scaffold_103_2
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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270..2546
DNA (2277bp) protein (759aa)
ATP-dependent Clp protease ATP-binding subunit ClpA n=2 Tax=Citrobacter RepID=R8VAJ6_9ENTR
ATP-dependent Clp protease ATP-binding subunit ClpA {ECO:0000313|EMBL:EOQ48526.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
clpA; Clp protease ClpX
L3_114_000G1_scaffold_103_3
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2793..4154)
DNA (1362bp) protein (454aa)
Peptidase, U32 family {ECO:0000313|EMBL:EFE10274.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFE10274.1};; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
Peptidase, U32 family n=2 Tax=Citrobacter RepID=D4B8A2_9ENTR
protease
L3_114_000G1_scaffold_103_4
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4275..5006)
DNA (732bp) protein (244aa)
Uncharacterized protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4B8A3_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KDF13844.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
hypothetical protein
L3_114_000G1_scaffold_103_5
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5086..5808)
DNA (723bp) protein (241aa)
Transcriptional regulatory protein BaeR n=1 Tax=Citrobacter sp. 30_2 RepID=C1M6B4_9ENTR
Transcriptional regulatory protein BaeR {ECO:0000313|EMBL:ETX63640.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
transcriptional regulator
L3_114_000G1_scaffold_103_6
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5805..7208)
DNA (1404bp) protein (468aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
HAMP domain protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H1Q9_SHIFL
histidine kinase
L3_114_000G1_scaffold_103_7
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7208..8620)
DNA (1413bp) protein (471aa)
Putative multidrug resistance protein MdtD n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SLF4_CITFR
Putative multidrug resistance protein MdtD {ECO:0000256|HAMAP-Rule:MF_01577, ECO:0000256|SAAS:SAAS00010768}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
transporter
L3_114_000G1_scaffold_103_8
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8617..11697)
DNA (3081bp) protein (1027aa)
Multidrug resistance protein MdtC n=1 Tax=Shigella flexneri 1235-66 RepID=I6H1Q7_SHIFL
Multidrug resistance protein MdtC {ECO:0000256|HAMAP-Rule:MF_01424, ECO:0000256|SAAS:SAAS00007749}; Multidrug transporter MdtC {ECO:0000256|HAMAP-Rule:MF_01424}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
multidrug transporter
L3_114_000G1_scaffold_103_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11698..14820)
DNA (3123bp) protein (1041aa)
Multidrug resistance protein MdtB n=3 Tax=Citrobacter RepID=J0VJ82_9ENTR
Multidrug resistance protein MdtB {ECO:0000256|HAMAP-Rule:MF_01423, ECO:0000256|SAAS:SAAS00007778}; Multidrug transporter MdtB {ECO:0000256|HAMAP-Rule:MF_01423}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
multidrug transporter
L3_114_000G1_scaffold_103_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(14820..16067)
DNA (1248bp) protein (416aa)
Multidrug resistance protein MdtA n=1 Tax=Shigella flexneri 1235-66 RepID=I6H1Q4_SHIFL
multidrug transporter
Multidrug resistance protein MdtA {ECO:0000256|HAMAP-Rule:MF_01422}; Multidrug transporter MdtA {ECO:0000256|HAMAP-Rule:MF_01422}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L3_114_000G1_scaffold_103_11
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(16504..17856)
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M6A8_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KDF13837.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
chaperone
L3_114_000G1_scaffold_103_12
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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17993..18862
DNA (870bp) protein (290aa)
DNA-3-methyladenine glycosylase 2 {ECO:0000313|EMBL:EIQ74694.1}; EC=3.2.2.21 {ECO:0000313|EMBL:EIQ74694.1};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
3-methyladenine DNA glycosylase (EC:3.2.2.21)
3-methyl-adenine DNA glycosylase n=1 Tax=Citrobacter freundii RepID=UPI0002FB659C
L3_114_000G1_scaffold_103_13
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(18830..22159)
DNA (3330bp) protein (1110aa)
PAS domain S-box protein n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SLE8_CITFR
Putative diguanylate cyclase YegE {ECO:0000313|EMBL:GAL43453.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
diguanylate cyclase
L3_114_000G1_scaffold_103_14
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22475..23116
DNA (642bp) protein (214aa)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
Uridine kinase n=1 Tax=Shigella flexneri 1235-66 RepID=I6H1Q0_SHIFL
uridine kinase
L3_114_000G1_scaffold_103_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23208..23789
DNA (582bp) protein (194aa)
Deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146, ECO:0000256|SAAS:SAAS00054741}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146, ECO:0000256|SAAS:SAAS00054755};; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
Deoxycytidine triphosphate deaminase n=8 Tax=Enterobacteriaceae RepID=D4B8B5_9ENTR
deoxycytidine triphosphate deaminase
L3_114_000G1_scaffold_103_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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23816..25669
DNA (1854bp) protein (618aa)
Assembly protein AsmA n=2 Tax=Citrobacter RepID=R8VC17_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KDF14237.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
assembly protein
L3_114_000G1_scaffold_103_17
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(25718..27322)
DNA (1605bp) protein (535aa)
Membrane protein n=3 Tax=Citrobacter RepID=R8UTB5_9ENTR
UPF0053 protein yegH {ECO:0000313|EMBL:KDF14236.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
membrane protein
L3_114_000G1_scaffold_103_18
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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27960..29099
DNA (1140bp) protein (380aa)
Lipoprotein required for capsular polysaccharide translocation through the outer membrane n=1 Tax=Citrobacter sp. KTE151 RepID=R8WV61_9ENTR
Polysaccharide export protein Wza {ECO:0000313|EMBL:KKC62253.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
polysaccharide export protein Wza
L3_114_000G1_scaffold_103_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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29105..29554
DNA (450bp) protein (150aa)
Protein-tyrosine-phosphatase wzb n=1 Tax=Citrobacter sp. KTE32 RepID=R8VB37_9ENTR
Protein-tyrosine-phosphatase wzb {ECO:0000313|EMBL:ETX69434.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
protein tyrosine phosphatase
L3_114_000G1_scaffold_103_20
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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29551..31713
DNA (2163bp) protein (721aa)
Tyrosine protein kinase {ECO:0000313|EMBL:KKC62255.1}; EC=2.7.10.2 {ECO:0000313|EMBL:KKC62255.1};; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
tyrosine protein kinase (EC:2.7.10.2)
Tyrosine-protein kinase wzc n=1 Tax=Citrobacter sp. KTE32 RepID=R8VFT8_9ENTR
L3_114_000G1_scaffold_103_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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31789..32631
DNA (843bp) protein (281aa)
Colanic acid biosynthesis glycosyl transferase WcaA n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SLE0_CITFR
wcaA; putative glycosyl transferase WcaA
Glycosyl transferase 2 family protein {ECO:0000313|EMBL:EHV57394.1}; TaxID=868160 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC6A.;"
L3_114_000G1_scaffold_103_22
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32634..33122
DNA (489bp) protein (163aa)
Putative colanic acid biosynthesis acetyltransferase wcaB {ECO:0000256|PIRNR:PIRNR000441}; EC=2.3.1.- {ECO:0000256|PIRNR:PIRNR000441};; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
Putative colanic acid biosynthesis acetyltransferase wcaB n=1 Tax=Citrobacter sp. KTE32 RepID=R8VAH2_9ENTR
wcaB; putative acyl transferase WcaE
L3_114_000G1_scaffold_103_23
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33119..34336
DNA (1218bp) protein (406aa)
Colanic acid biosynthesis glycosyl transferase WcaC {ECO:0000313|EMBL:EFE10296.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFE10296.1};; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
glycosyl transferase n=1 Tax=Citrobacter freundii RepID=UPI0002D93BCF
glycosyl transferase
L3_114_000G1_scaffold_103_24
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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34311..35528
DNA (1218bp) protein (406aa)
Putative colanic acid polymerase WcaD n=1 Tax=Citrobacter sp. 30_2 RepID=C1M695_9ENTR
Colanic acid biosynthesis protein {ECO:0000313|EMBL:KKC62259.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
wcaD; putative colanic acid polymerase WcaD
L3_114_000G1_scaffold_103_25
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35534..36280
DNA (747bp) protein (249aa)
Colanic acid biosynthesis glycosyl transferase WcaE {ECO:0000313|EMBL:EFE10298.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFE10298.1};; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
glycosyl transferase n=1 Tax=Citrobacter freundii RepID=UPI0002E7653A
glycosyl transferase
L3_114_000G1_scaffold_103_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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36290..36844
DNA (555bp) protein (185aa)
Colanic acid biosynthesis acetyltransferase WcaF {ECO:0000313|EMBL:KEL81138.1}; EC=2.3.1.- {ECO:0000313|EMBL:KEL81138.1};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
Acyl transferase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CM85_CITFR
wcaF; putative acyl transferase WcaF
L3_114_000G1_scaffold_103_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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36869..37990
DNA (1122bp) protein (374aa)
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47)
GDP-mannose 4,6-dehydratase n=6 Tax=Citrobacter RepID=G9SLD4_CITFR
L3_114_000G1_scaffold_103_28
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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37990..38964
DNA (975bp) protein (325aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
GDP-L-fucose synthase n=1 Tax=Shigella flexneri 1235-66 RepID=I6H1N5_SHIFL
GDP-fucose synthetase
L3_114_000G1_scaffold_103_29
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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38964..39443
DNA (480bp) protein (160aa)
GDP-mannose mannosyl hydrolase {ECO:0000313|EMBL:EIQ74676.1}; EC=3.6.1.- {ECO:0000313|EMBL:EIQ74676.1};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
GDP-mannose mannosyl hydrolase n=1 Tax=Shigella flexneri 1235-66 RepID=I6H1N4_SHIFL
gmm; GDP-mannose mannosyl hydrolase
L3_114_000G1_scaffold_103_30
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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39440..40663
DNA (1224bp) protein (408aa)
Glycosyl transferases group 1 family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6H1N3_SHIFL
Glycosyl transferases group 1 family protein {ECO:0000313|EMBL:EIQ74675.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
putative glycosyl transferase
Displaying items 1-30 of 123 in total

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