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L3_114_000G1_scaffold_114

Search features with annotation key words

Displaying items 1-30 of 113 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_114_1
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

316..1197
DNA (882bp) protein (294aa)
DegV family EDD domain-containing protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BPW8_9FIRM
DegV family EDD domain-containing protein {ECO:0000313|EMBL:EHO81140.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
degV family protein
L3_114_000G1_scaffold_114_2
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1391..1867
DNA (477bp) protein (159aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FW60_9FIRM
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
L3_114_000G1_scaffold_114_3
Clostridium sartagoforme, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1991..2662
DNA (672bp) protein (224aa)
Response regulator n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C667_9CLOT
Response regulator {ECO:0000313|EMBL:EOR24495.1}; TaxID=1202534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sartagoforme AAU1.;"
response regulator with CheY-like receiver domain and winged-helix DNA-binding domain
L3_114_000G1_scaffold_114_4
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2671..3666
DNA (996bp) protein (332aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0NAC5_9CLOT
signal transduction histidine kinase
L3_114_000G1_scaffold_114_5
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3782..4549
DNA (768bp) protein (256aa)
ABC transporter (ATP-binding protein) efflux of cationic peptides n=1 Tax=Clostridium ultunense Esp RepID=M1ZID5_9CLOT
ABC transporter (ATP-binding protein) efflux of cationic peptides {ECO:0000313|EMBL:CCQ98173.1}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
ABC transporter
L3_114_000G1_scaffold_114_6
Syntrophaceticus schinkii, Syntrophaceticus, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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4539..6518
DNA (1980bp) protein (660aa)
Lipoprotein release ABC transporter permease n=1 Tax=Clostridium sartagoforme AAU1 RepID=R9C663_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CEO88786.1}; TaxID=499207 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Syntrophaceticus.;" source="Syntrophaceticus schinkii.;"
lipoprotein release ABC transporter permease
L3_114_000G1_scaffold_114_7
Clostridium argentinense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6533..7792
DNA (1260bp) protein (420aa)
Erythromycin esterase-like enzyme n=1 Tax=Desulfotomaculum gibsoniae DSM 7213 RepID=R4KQE8_9FIRM
Erythromycin esterase family protein {ECO:0000313|EMBL:KIE48101.1}; TaxID=1418104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium argentinense CDC 2741.;"
erythromycin esterase-like enzyme
L3_114_000G1_scaffold_114_8
Terrisporobacter othiniensis, Terrisporobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7866..8549)
DNA (684bp) protein (228aa)
AraC family transcriptional regulator n=1 Tax=Bacillus bataviensis LMG 21833 RepID=K6DWI5_9BACI
Uncharacterized protein {ECO:0000313|EMBL:KHS58900.1}; TaxID=1577792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Terrisporobacter.;" source="Terrisporobacter othiniensis.;"
AraC family transcriptional regulator
L3_114_000G1_scaffold_114_9
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8988..9749
DNA (762bp) protein (254aa)
serine O-acetyltransferase (EC:2.3.1.30)
Serine O-acetyltransferase {ECO:0000313|EMBL:ADZ83073.1}; EC=2.3.1.30 {ECO:0000313|EMBL:ADZ83073.1};; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Serine acetyltransferase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JI45_CELLD
L3_114_000G1_scaffold_114_10
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9742..11154
DNA (1413bp) protein (471aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Cysteine--tRNA ligase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JI46_CELLD
L3_114_000G1_scaffold_114_11
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11166..11588
DNA (423bp) protein (141aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Mini-ribonuclease 3 n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JI47_CELLD
ribonuclease III
L3_114_000G1_scaffold_114_12
GWD2_Clostridiales_32_19_curated, Clostridiales, Bacteria

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11612..13195
DNA (1584bp) protein (528aa)
Polysaccharide biosynthesis protein id=1901849 bin=GWD2_Clostridiales_32_19 species=Alkaliphilus oremlandii genus=Alkaliphilus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Clostridiales_32_19 organism_group=Firmicute organism_desc=a85
polysaccharide biosynthesis protein
Tax=GWD2_Clostridiales_32_19_curated
L3_114_000G1_scaffold_114_13
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13198..14187
DNA (990bp) protein (330aa)
RNA methyltransferase, TrmH family, group 3 n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JI48_CELLD
TrmH family RNA methyltransferase
RNA methyltransferase, TrmH family, group 3 {ECO:0000313|EMBL:ADZ83076.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_114_000G1_scaffold_114_14
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14249..14857
DNA (609bp) protein (203aa)
Transcriptional regulator, LuxR family n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JI50_CELLD
LuxR family transcriptional regulator
Transcriptional regulator, LuxR family {ECO:0000313|EMBL:ADZ83078.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_114_000G1_scaffold_114_15
Turicibacter sanguinis, Turicibacter, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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14954..16366
DNA (1413bp) protein (471aa)
SPFH/Band 7/PHB domain protein n=2 Tax=Turicibacter RepID=D4W608_9FIRM
SPFH/Band 7/PHB domain protein {ECO:0000313|EMBL:EFF63595.1}; TaxID=702450 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Turicibacter.;" source="Turicibacter sanguinis PC909.;"
SPFH/Band 7/PHB domain protein
L3_114_000G1_scaffold_114_16
unknown

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16672..17145
DNA (474bp) protein (158aa)

This feature has no annotations

L3_114_000G1_scaffold_114_17
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17191..18672)
DNA (1482bp) protein (494aa)
UDP-glucose--hexose-1-phosphate uridylyltransferase (EC:2.7.7.12)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
Galactose-1-phosphate uridylyltransferase n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JML5_CELLD
L3_114_000G1_scaffold_114_18
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18665..19852)
DNA (1188bp) protein (396aa)
galK; galactokinase (EC:2.7.1.6)
Galactokinase {ECO:0000255|HAMAP-Rule:MF_00246}; EC=2.7.1.6 {ECO:0000255|HAMAP-Rule:MF_00246};; Galactose kinase {ECO:0000255|HAMAP-Rule:MF_00246}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
galactokinase n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0C38
L3_114_000G1_scaffold_114_19
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20032..21012
DNA (981bp) protein (327aa)
Transcriptional regulator, LacI family n=1 Tax=Clostridium perfringens (strain SM101 / Type A) RepID=Q0ST97_CLOPS
LacI family transcription regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ABG86170.1}; TaxID=289380 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain SM101 / Type A).;"
L3_114_000G1_scaffold_114_20
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21017..22054
DNA (1038bp) protein (346aa)
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
aldose 1-epimerase (EC:5.1.3.3)
aldose 1-epimerase precursor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0C35
L3_114_000G1_scaffold_114_21
[Clostridium] cellulolyticum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22134..23456)
DNA (1323bp) protein (441aa)
Glycoside hydrolase family 4 n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I1S9_CLOCE
glycoside hydrolase
Glycoside hydrolase family 4 {ECO:0000313|EMBL:ACL77714.1}; TaxID=394503 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 /; H10).;"
L3_114_000G1_scaffold_114_22
Clostridium sp. Maddingley MBC34-26, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23626..24417
DNA (792bp) protein (264aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6U633_9CLOT
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EKQ56612.1}; TaxID=1196322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. Maddingley MBC34-26.;"
AraC-type DNA-binding domain-containing proteins
L3_114_000G1_scaffold_114_23
unknown

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24585..24926
DNA (342bp) protein (114aa)

This feature has no annotations

L3_114_000G1_scaffold_114_24
Leptotrichia sp. oral taxon 215, Leptotrichia, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(25085..26149)
DNA (1065bp) protein (355aa)
Glycerol dehydrogenase n=1 Tax=Leptotrichia sp. oral taxon 215 str. W9775 RepID=U2RD18_9FUSO
Glycerol dehydrogenase {ECO:0000313|EMBL:ERK66771.1}; TaxID=1321779 species="Bacteria; Fusobacteria; Fusobacteriales; Leptotrichiaceae; Leptotrichia.;" source="Leptotrichia sp. oral taxon 215 str. W9775.;"
iron-containing alcohol dehydrogenase
L3_114_000G1_scaffold_114_25
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26518..27849
DNA (1332bp) protein (444aa)
yidJ; sulfatase YidJ (EC:3.1.6.-)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9X8S0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY96137.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
L3_114_000G1_scaffold_114_26
unknown

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28022..28180
DNA (159bp) protein (53aa)

This feature has no annotations

L3_114_000G1_scaffold_114_27
Eimeria brunetti, Eimeria, Eucoccidiorida, Coccidia, Apicomplexa, Eukaryota

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28250..29302
DNA (1053bp) protein (351aa)
PAN domain-containing protein, putative n=1 Tax=Eimeria brunetti RepID=U6M125_9EIME
PAN domain-containing protein, putative {ECO:0000313|EMBL:CDJ53770.1}; TaxID=51314 species="Eukaryota; Alveolata; Apicomplexa; Conoidasida; Coccidia; Eucoccidiorida; Eimeriorina; Eimeriidae; Eimeria.;" source="Eimeria brunetti.;"
FHA-domain containing protein
L3_114_000G1_scaffold_114_28
Clostridium perfringens, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29411..29716
DNA (306bp) protein (102aa)
Uncharacterized protein n=5 Tax=Clostridium perfringens RepID=Q8XME5_CLOPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAB80450.1}; TaxID=195102 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium perfringens (strain 13 / Type A).;"
L3_114_000G1_scaffold_114_29
Paraprevotella clara CAG:116, Paraprevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(29770..30006)
DNA (237bp) protein (79aa)
F5/8 type C domain protein n=1 Tax=Paraprevotella clara CAG:116 RepID=R5NE50_9BACT
F5/8 type C domain protein {ECO:0000313|EMBL:CCZ02440.1}; TaxID=1263095 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Paraprevotella; environmental samples.;" source="Paraprevotella clara CAG:116.;"
L3_114_000G1_scaffold_114_30
GWB2_Ignavibacteria_35_6b_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

30262..31974
DNA (1713bp) protein (571aa)
Uncharacterized protein n=1 Tax=Bacteroides thetaiotaomicron dnLKV9 RepID=R9HA49_BACT4
hypothetical protein
Tax=GWB2_Ignavibacteria_35_6b_curated
Displaying items 1-30 of 113 in total

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