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L3_114_000G1_scaffold_116

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Displaying items 1-30 of 254 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_116_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(194..1291)
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7E3_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO04567.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1284..1787)
DNA (504bp) protein (168aa)
RNA polymerase sigma-24 subunit ECF subfamily n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZV1_9FIRM
sig10; RNA polymerase sigma factor
RNA polymerase sigma factor {ECO:0000313|EMBL:CCO04566.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1894..2493)
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAM2_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04565.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2521..3612)
DNA (1092bp) protein (364aa)
aroC; Chorismate synthase (EC:4.2.3.5)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000313|EMBL:CCO04564.1}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000313|EMBL:CCO04564.1};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Chorismate synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3G0_9FIRM
L3_114_000G1_scaffold_116_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3699..4721)
DNA (1023bp) protein (341aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CBX5_9FIRM
L3_114_000G1_scaffold_116_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4718..4876)
DNA (159bp) protein (53aa)
aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|RuleBase:RU000531};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Ruminococcus albus 8 RepID=E9SF88_RUMAL
L3_114_000G1_scaffold_116_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4889..5998)
DNA (1110bp) protein (370aa)
aroB; 3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210858}; EC=4.2.3.4 {ECO:0000256|HAMAP-Rule:MF_00110, ECO:0000256|SAAS:SAAS00210855};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
3-dehydroquinate synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7E7_9FIRM
L3_114_000G1_scaffold_116_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6048..6518)
DNA (471bp) protein (157aa)
Uncharacterized conserved protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZV5_9FIRM
uncharacterized conserved protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CCO04561.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6631..7653)
DNA (1023bp) protein (341aa)
aroF; 3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAM7_9FIRM
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:CDC66739.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000G1_scaffold_116_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8004..9266)
DNA (1263bp) protein (421aa)
GTPase HflX n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3G6_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
GTPase
L3_114_000G1_scaffold_116_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9552..11888)
DNA (2337bp) protein (779aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CF96_9FIRM
putative response regulator
Putative response regulator {ECO:0000313|EMBL:CCO04558.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11972..14584)
DNA (2613bp) protein (871aa)
Cyclic diguanylate phosphodiesterase (EAL) domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZV8_9FIRM
Uncharacterized signaling protein
Uncharacterized signaling protein {ECO:0000313|EMBL:CCO04557.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14818..17103
DNA (2286bp) protein (762aa)
recQ; ATP-dependent DNA helicase RecQ (EC:3.6.4.12)
ATP-dependent DNA helicase RecQ n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAN2_9FIRM
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:CDC66744.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000G1_scaffold_116_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17181..18854)
DNA (1674bp) protein (558aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3H0_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDC66745.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Uncharacterized signaling protein
L3_114_000G1_scaffold_116_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19008..19943)
DNA (936bp) protein (312aa)
Phosphoribulokinase/uridine kinase family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFT1_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04554.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20036..21622)
DNA (1587bp) protein (529aa)
Putative ribonuclease n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7F5_9FIRM
putative ribonuclease
Putative ribonuclease {ECO:0000313|EMBL:CCO04553.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21832..22098
DNA (267bp) protein (89aa)
Sporulation transcriptional regulator SpoIIID n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZW2_9FIRM
spore_III_D; sporulation transcriptional regulator SpoIIID
Sporulation transcriptional regulator SpoIIID {ECO:0000313|EMBL:CCO04552.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22133..23602)
DNA (1470bp) protein (490aa)
Cation transport protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAN7_9FIRM
Cation transport protein {ECO:0000313|EMBL:CDC66749.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
trkH2; Trk system potassium uptake protein TrkH
L3_114_000G1_scaffold_116_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23613..24998)
DNA (1386bp) protein (462aa)
Potassium transporter peripheral membrane component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3H5_9FIRM
Potassium transporter peripheral membrane component {ECO:0000313|EMBL:CDC66750.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
trkA2; Trk system potassium uptake protein trkA
L3_114_000G1_scaffold_116_20
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25295..27553)
DNA (2259bp) protein (753aa)
ABC-type transport system involved in lipoprotein release permease component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFT7_9FIRM
ABC-type transport system involved in lipoprotein release permease component {ECO:0000313|EMBL:CDC66751.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ABC transporter permease
L3_114_000G1_scaffold_116_21
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27565..28269)
DNA (705bp) protein (235aa)
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7F9_9FIRM
ABC-type antimicrobial peptide transport system ATPase component {ECO:0000313|EMBL:CDC66752.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ABC transporter ATP-binding protein
L3_114_000G1_scaffold_116_22
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28441..28818)
DNA (378bp) protein (126aa)
Iron dependent repressor N-terminal DNA binding domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZW6_9FIRM
putative transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:CCO04547.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28853..29011)
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAP1_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04546.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29063..31552)
DNA (2490bp) protein (830aa)
Ferrous iron transporter FeoB n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3I0_9FIRM
feoB; Ferrous iron transport protein B
Ferrous iron transport protein B {ECO:0000313|EMBL:CCO04545.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31657..31878)
DNA (222bp) protein (74aa)
Fe2+ transport system protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFU2_9FIRM
feoA3; Ferrous iron transport protein A
Fe2+ transport system protein A {ECO:0000313|EMBL:CDC66756.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000G1_scaffold_116_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31948..32160)
DNA (213bp) protein (71aa)
Fe2+ transport system protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7G2_9FIRM
feoA2; Ferrous iron transport protein A
Fe2+ transport system protein A {ECO:0000313|EMBL:CDC66757.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000G1_scaffold_116_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32457..32864)
DNA (408bp) protein (136aa)
Flavodoxin n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZX0_9FIRM
fld; Flavodoxin
Flavodoxin {ECO:0000313|EMBL:CCO04542.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32877..33449)
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAP6_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04541.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33493..33792)
DNA (300bp) protein (100aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3I5_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO04540.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000G1_scaffold_116_30
Ruminococcus sp. CAG:579, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34047..35291)
DNA (1245bp) protein (415aa)
Lysophospholipase L1 and related esterases n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CMM3_9FIRM
Lysophospholipase L1 and related esterases {ECO:0000313|EMBL:CDA74044.1}; TaxID=1262963 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:579.;"
Lysophospholipase L1 and related esterases
Displaying items 1-30 of 254 in total

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