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L3_114_000G1_scaffold_231

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Displaying items 1-30 of 93 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_231_1
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1..2361)
DNA (2361bp) protein (787aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJK8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22127.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
pbpA1; penicillin-binding protein PbpA1
L3_114_000G1_scaffold_231_2
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2354..2872)
DNA (519bp) protein (173aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PUF4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22126.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
rod shape-determining protein MreD
L3_114_000G1_scaffold_231_3
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2890..3753)
DNA (864bp) protein (288aa)
Cell shape-determining protein MreC n=2 Tax=Clostridium RepID=B6FND5_9CLOT
Cell shape-determining protein MreC {ECO:0000256|PIRNR:PIRNR038471}; Cell shape protein MreC {ECO:0000256|PIRNR:PIRNR038471}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
rod shape-determining protein MreC
L3_114_000G1_scaffold_231_4
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3755..4777)
DNA (1023bp) protein (341aa)
Cell shape determining protein, MreB/Mrl family n=2 Tax=Clostridium RepID=B6FND4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22124.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Actin-like ATPase involved in cell morphogenesis
L3_114_000G1_scaffold_231_5
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4796..5569)
DNA (774bp) protein (258aa)
DNA repair protein RadC n=2 Tax=Clostridium RepID=B6FND3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22123.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA replication and repair protein RadC
L3_114_000G1_scaffold_231_6
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5529..5789)
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FND2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22122.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_114_000G1_scaffold_231_7
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5898..7556)
DNA (1659bp) protein (553aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUE9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22121.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized FAD-dependent dehydrogenases
L3_114_000G1_scaffold_231_8
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7496..8731)
DNA (1236bp) protein (412aa)
Flavoprotein family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FND0_9CLOT
Flavoprotein family protein {ECO:0000313|EMBL:EEA82422.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Predicted flavoproteins
L3_114_000G1_scaffold_231_9
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8728..10011)
DNA (1284bp) protein (428aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PMQ0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22119.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Cystathionine beta-lyase family protein involved in aluminum resistance
L3_114_000G1_scaffold_231_10
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9999..10955)
DNA (957bp) protein (319aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
tRNA isopentenyltransferase (miaA) (EC:2.5.1.75)
tRNA dimethylallyltransferase n=1 Tax=Clostridium nexile CAG:348 RepID=R6PCU7_9CLOT
L3_114_000G1_scaffold_231_11
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10964..12955)
DNA (1992bp) protein (664aa)
DNA mismatch repair protein MutL n=1 Tax=Clostridium nexile CAG:348 RepID=R6QJK0_9CLOT
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA mismatch repair protein MutL
L3_114_000G1_scaffold_231_12
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12977..15628)
DNA (2652bp) protein (884aa)
DNA mismatch repair protein MutS n=1 Tax=Clostridium nexile CAG:348 RepID=R6PUE7_9CLOT
DNA mismatch repair protein MutS {ECO:0000256|HAMAP-Rule:MF_00096, ECO:0000256|SAAS:SAAS00184333}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
DNA mismatch repair protein MutS
L3_114_000G1_scaffold_231_13
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15803..16219)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PW72_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22721.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted membrane protein
L3_114_000G1_scaffold_231_14
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16292..17803)
DNA (1512bp) protein (504aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00078006}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864, ECO:0000256|SAAS:SAAS00077858};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=2 Tax=Clostridium RepID=R6PGJ9_9CLOT
tRNA-i(6)A37 thiotransferase enzyme MiaB
L3_114_000G1_scaffold_231_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17769..17951)
DNA (183bp) protein (61aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNC1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22719.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_114_000G1_scaffold_231_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17944..18492)
DNA (549bp) protein (183aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNC0_9CLOT
L3_114_000G1_scaffold_231_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18470..18691)
DNA (222bp) protein (74aa)
UPF0291 protein CLONEX_01627 n=2 Tax=Clostridium RepID=B6FNB9_9CLOT
UPF0291 protein CLONEX_01627 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_114_000G1_scaffold_231_18
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18781..19146)
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNB8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22716.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_114_000G1_scaffold_231_19
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19193..20014)
DNA (822bp) protein (274aa)
Pyridoxal kinase {ECO:0000256|SAAS:SAAS00088591}; EC=2.7.1.35 {ECO:0000256|SAAS:SAAS00088591};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PGJ5_9CLOT
phosphomethylpyrimidine kinase type-1
L3_114_000G1_scaffold_231_20
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20016..21680)
DNA (1665bp) protein (555aa)
Polysaccharide biosynthesis protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNB5_9CLOT
Polysaccharide biosynthesis protein {ECO:0000313|EMBL:EEA82483.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Membrane protein involved in the export of O-antigen and teichoic acid
L3_114_000G1_scaffold_231_21
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21702..22196)
DNA (495bp) protein (165aa)
Endoribonuclease YbeY {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023089}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00009, ECO:0000256|SAAS:SAAS00023108};; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Endoribonuclease YbeY n=2 Tax=Clostridium RepID=B6FNB4_9CLOT
conserved hypothetical protein TIGR00043
L3_114_000G1_scaffold_231_22
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22196..23236)
DNA (1041bp) protein (347aa)
PhoH family protein n=2 Tax=Clostridium RepID=B6FNB3_9CLOT
PhoH family protein {ECO:0000313|EMBL:EEA82481.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
Phosphate starvation-inducible protein PhoH, predicted ATPase
L3_114_000G1_scaffold_231_23
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23236..24444)
DNA (1209bp) protein (403aa)
Putative sporulation protein YqfD n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNB2_9CLOT
Putative sporulation protein YqfD {ECO:0000313|EMBL:EEA82480.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
sporulation protein YqfD
L3_114_000G1_scaffold_231_24
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24457..24726)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=R6PGJ2_9CLOT
Putative sporulation protein YqfC {ECO:0000313|EMBL:EEA82479.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
sporulation protein YqfC
L3_114_000G1_scaffold_231_25
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24782..26119)
DNA (1338bp) protein (446aa)
MATE efflux family protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNB0_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:EEA82478.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_114_000G1_scaffold_231_26
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26094..28784)
DNA (2691bp) protein (897aa)
Putative translation elongation factor G n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNA9_9CLOT
Putative translation elongation factor G {ECO:0000313|EMBL:EEA82477.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
small GTP-binding protein domain
L3_114_000G1_scaffold_231_27
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28789..30078)
DNA (1290bp) protein (430aa)
Putative guanine deaminase n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FNA8_9CLOT
Putative guanine deaminase {ECO:0000313|EMBL:EEA82476.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
hypothetical protein
L3_114_000G1_scaffold_231_28
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30103..30807)
DNA (705bp) protein (235aa)
exonuclease, DNA polymerase III, epsilon subunit family (EC:2.7.7.7)
Exonuclease, DNA polymerase III, epsilon subunit family n=2 Tax=Clostridium RepID=B6FNA7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22706.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
L3_114_000G1_scaffold_231_29
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30807..31490)
DNA (684bp) protein (228aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=B6FNA6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22705.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
hypothetical protein
L3_114_000G1_scaffold_231_30
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31505..32368)
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PPG7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC22704.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Predicted transcriptional regulators
Displaying items 1-30 of 93 in total

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